GgaEX0001914 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr17:8285084-8286435:+
Coord C1 exon
chr17:8285084-8285129
Coord A exon
chr17:8285312-8285361
Coord C2 exon
chr17:8285807-8286435
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTACTCTCTGCAGTTA
3' ss Score
9.14
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTATTTCTGGAAAGGGGAACTGGAAGAATCCACTGAAATCCTGCTG
Seq A exon
TTAGTAAAAACAAGGACGTCCAAAATAAGTGAACTGTCCAACTATGTCAG
Seq C2 exon
ATCCATCCATCCCTTTGAAATCCCCGAAGTCATCAGCCTGCCTATCGACCAAGGAAACCCCCTCTACCTCAAGTGGATCGGAGAAAACGTCCCACGGGATTGAATGAACAGCCCCAGAAGCCGCCCTGCTCTCGAGGAGACGCGATGAGACGAGTTCTGCTGGTGTCTGTGCAGAGCGACACGGGAAGCAGCTCACGTCCCCAGGGGTGTGCTACAGCACAGGAGTCTGAGATGGGGAATTTCATTTGAACTTGAGACGTCCCCTCCCTGGCCTGGCCCTGCAGCAGCACCGAGCTGGAGGCAGCACTGGAACGGGAAAGGGCACCACAGGGCTGCTGCTGCCTGGAGGTGCTCGCAGCACTGCCCTGCAGCACCTGGGGATGGTGCAGCATGTGCCGCTCACACAGGTGGCACTGGCTGAGCCCCAGCAAGCACCCTGCCTGTCAGCTGGGCTGAGCTGGGCAAAGCAACCCCATTCGGGGACCCAGGAGCCAGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001620_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(14.7=100)
A:
PF0309110=CutA1=FE(15.7=100)
C2:
PF0309110=CutA1=PD(30.4=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAAAGGGGAACTGGAAGA
R:
GGGACGTTTTCTCCGATCCAC
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]