GgaEX0001914 @ galGal3
Exon Skipping
Gene
ENSGALG00000001620 | CUTA
Description
NA
Coordinates
chr17:8984244-8985287:+
Coord C1 exon
chr17:8984244-8984289
Coord A exon
chr17:8984472-8984521
Coord C2 exon
chr17:8984967-8985287
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTACTCTCTGCAGTTA
3' ss Score
9.14
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTATTTCTGGAAAGGGGAACTGGAAGAATCCACTGAAATCCTGCTG
Seq A exon
TTAGTAAAAACAAGGACGTCCAAAATAAGTGAACTGTCCAACTATGTCAG
Seq C2 exon
ATCCATCCATCCCTTTGAAATCCCCGAAGTCATCAGCCTGCCTATCGACCAAGGAAACCCCCTCTACCTCAAGTGGATCGGAGAAAACGTCCCACGGGATTGAATGAACAGCCCCAGAAGCCGCCCTGCTCTCGAGGAGACGCGATGAGACGAGTTCTGCTGGTGTCTGTGCAGAGCGACACGGGAAGCAGCTCACGTCCCCAGGGGTGTGCTACAGCACAGGAGTCTGAGATGGGGAATTTCATTTGAACTTGAGACGTCCCCTCCCTGGCCTGGCCCTGCAGCAGCACCGAGCTGGAGGCAGCACTGGAACGGGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001620_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(14.7=100)
A:
PF0309110=CutA1=FE(15.7=100)
C2:
PF0309110=CutA1=PD(30.4=88.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAAAGGGGAACTGGAAGA
R:
GGGACGTTTTCTCCGATCCAC
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event