GgaINT0123715 @ galGal3
Intron Retention
Gene
ENSGALG00000001620 | CUTA
Description
NA
Coordinates
chr17:8984472-8985595:+
Coord C1 exon
chr17:8984472-8984521
Coord A exon
chr17:8984522-8984966
Coord C2 exon
chr17:8984967-8985595
Length
445 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTGTCTGTTTCCACTTTAGATC
3' ss Score
11.7
Exon sequences
Seq C1 exon
TTAGTAAAAACAAGGACGTCCAAAATAAGTGAACTGTCCAACTATGTCAG
Seq A exon
GTGAGCACGGGGCTTCCTATCCGCAGTATGCAGCCATCTCGTCCTCAGGCTTTGGGTCTCCTCAAGACCAGTCCCACCCAGGAGGGCTCTAGGCACTGCTGGGTACACTCTGAGAGCCAGAAAAGCTCCAGCACCGCACCAGCTGGGAGCAGGCTGCTGGGAACATCAGGCTCCCTGCATGGGACAAGGAGGGCTTCAGGGTCTGCAGGTCCCCCCCCATCTGCAGATTTCCTGTCCACCCCACGCGCTGACTACTGAGCACAGCTGGTGGCTGTGGTAAACCTCAAACTCAAAGCAAAATTCCCACGTGGCACAAAGTGCTTTGAAGTCAGGGGGGATCGCCCGGGGCAGAGCCCACGCACCGCACTGCTTCCTGCACCGCCAGCCTGTTCCTGCTGCGGGATGCAGCCGTGGCACTGCGCCGCTGTGTCTGTTTCCACTTTAG
Seq C2 exon
ATCCATCCATCCCTTTGAAATCCCCGAAGTCATCAGCCTGCCTATCGACCAAGGAAACCCCCTCTACCTCAAGTGGATCGGAGAAAACGTCCCACGGGATTGAATGAACAGCCCCAGAAGCCGCCCTGCTCTCGAGGAGACGCGATGAGACGAGTTCTGCTGGTGTCTGTGCAGAGCGACACGGGAAGCAGCTCACGTCCCCAGGGGTGTGCTACAGCACAGGAGTCTGAGATGGGGAATTTCATTTGAACTTGAGACGTCCCCTCCCTGGCCTGGCCCTGCAGCAGCACCGAGCTGGAGGCAGCACTGGAACGGGAAAGGGCACCACAGGGCTGCTGCTGCCTGGAGGTGCTCGCAGCACTGCCCTGCAGCACCTGGGGATGGTGCAGCATGTGCCGCTCACACAGGTGGCACTGGCTGAGCCCCAGCAAGCACCCTGCCTGTCAGCTGGGCTGAGCTGGGCAAAGCAACCCCATTCGGGGACCCAGGAGCCAGCAGGGCGTAGCGTCGCTGCTTTCTCCCCAGACCAAGCTGAGCCTTAGAAAAAGATGCTTGTGTTGTGTAATTGGATGTAAGCTATGAAATAAATCCATTGTGTGGCTGGGAAGGGAATAAACCAGAGCATTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001620:ENSGALT00000038894:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(15.7=100)
A:
NA
C2:
PF0309110=CutA1=PD(30.4=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCCAAAATAAGTGAACTGTCCA
R:
CCTTTCCCGTTCCAGTGCTG
Band lengths:
356-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]