HsaINT0093611 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:123609572-123616651:+
Coord C1 exon
chr9:123609572-123609631
Coord A exon
chr9:123609632-123613515
Coord C2 exon
chr9:123613516-123616651
Length
3884 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
GCTTTGCTTTCTCTCCAAAGGCT
3' ss Score
9.45
Exon sequences
Seq C1 exon
GGCCATGCTGGATAAGGAGCTGGCTGCCTCTGTGAACATCCTACTCAAGGCATCTTCACT
Seq A exon
GTGAGTTTTGCTGTTGCCATTGGAGGGGGAGTGGGGGGAGTGTGGGGAGTGCTAGGGTCAGGTCCTGGCTGGTGTAAAGAACACTGAATTAAAGGAATTGTCAGAATAACTCAAAGGCATTTAGATAATCAACAGTCCATTTCAGTGTTTTTATTCAGAGATCGATCGATCAGTGGGATGTTGTCCAACAAAAGCAAAAATAGACTGTATAGAGAAGGAAGGAAAAACTGCATAATTTAGGAACAGTATATCTTGTTTGCACATTCTTTGGTTAAATCAATTAGCCTGCTGTTAGGAAGGAAGTCTGGGCATTTTATCCTTGAGTAAACCAACTAGGGATATCAGAGAAAACAGTTTCCAATGCTTTTGGATTCTCCAGAAAACAGACAGTTTAGCATATATGACAGGCTGCTTCTGCGTATTGTCTACCTTTCATTTCATTAACAACTTCACTTTAGAAGCCTGGTCTGCACCATTTCCCTCATCACAATACTTTAGCATCCTGGCACTAGCTGTGCAGGATTTGTCGTACGTCTTCCTTTCCCTGATGATCATGTTTCTCATTTCCTTCCCTCTCTCCCTTACACCCTCAAAAGAGAGAGACATAATATACATTCTCAAGGTCATATAAGCTATATAATGAAAGCTACCTTTTTCTCCCCAGTGATGTTATTTCCTCAGTGGCTCACACCATCTGTAGTCATAGTTCCCAAATTTGGCCATGCGGTCTATCCCTGAACTCCAGCCTCAATCTATTCAATTAGTCGCCCTGAGGATGGGGCCCAGGTCTCTGAATTTTTAAAGACTTGTATAGATAAGTCACATTTAGCCAGTCTGGGAACCAGTGTTGGGAAATTGAATAGAATTTCATCCTACTATTTCCTTTATATGCCCATCCTTTCTCGTGATGTATTATTTTGCCACAGTCCTGTGACACAGGAAGGGCCAGTGGCCTTGGTCATCTTAGATTTGCCCTTGTTGATCTTCTCAGGGTAAATGTCTTTCCTTTCCCCTGATGGTGTTCTTATACTGTCTTCTGATCATCATTTCTGACTTTGTTTTCAGCATCTAAAAGTTTCCATAACTATAAGGCTTACTTCTTCCCTGCAGTCTTCCGTGTTTTTAGTTATTCATTTATGGGCACTCTCCTTGGAAAGTCAGTGATCAAAATAGCACTAGTGTGTAGGATGAGCACTGGAAGAGCTCAAGCAGAGAAGACATAGGAGTTTCTGCAGGGCTGTCCTGGGGTGGTTCTTGATGAGGCCAGTTGGGGAAAAAGCTAGGTGGCAGATGTTGGCACACTATAAGAAAAAGCATCTTGTGAAAACCTTTAAGTTAGATGGACTTCATCAAGAGATGATGAACCTCCCACCTCCAGGAATGTTCAGGCAAATGCCAGATGCATGCATTGGAATCGTTGGACCAGATGACATGTGAGGCCTTGGTCAACTCTAGACTTGTTTATATAGGCTTGGAAAGATTTTAAAGTTTTCTCCTCAGTAGGTCACTTAGGTGGGCCAGGTTTGACACTTCACTGAGCTCCTCTTAGGAGCATCATAATTTGGTTTTGTTCCCTTCTCCAGGTACTTTTGGGAGGGAAAAATAGAAGCCACTAACATCCTGTTAGTGAGGATGTGAGTGTAGGGAGTCTTTTTTTTTTTCTTTTTTTTTTGAGACGGAGTCTCACTCTGTTGTCCAGGCTGGAATGCAGCGGCATGATCTCAGCTCACTACAGCCTCTGTGTCCCGGGTTAAAGCGATTCTCCTGTTTCAGCCTCCCAAGTAGTTGGGATTACAGGTGCCCGCCACCATGCCCGGCTTATTATTTTTTTTGTCTTTATTTTTTGGTAGAGACAGAGTTTTGCTATGTTGGCCAGGCTGGTCTTCAACTCCTGGACTCAAGTGATCCACCTGCCTCGCCCTCCTACAGTGCTGGGATATAGGCATGAGCCACCACACCCAGCCTGTTGTTTGTTTTTTCTTTTCTTTTCTTTTTTTTTTTTTTAACCATTAGTGCAAATGTCAACATAGTAAAAGGATAAATAATAAAATAATATTGTTATGAAAGTAGTTTTGACCCCATGGACCCCCTAGAGTCCTGGAGATCCCCATGGGTCAGTGGACCTTCACTTTGAGAACCTCTAGTATAAACCTTTATCATTCAGAAGTGGAATTTTTGGAATTGGCATCACCTGGGAGCTTTCAAGAACTGTAGAATCTCCTGCTCACCCCAGACCTACCGAATCAAATTATAGTTTAACAAGACCCCCAGGGGATTTCTGTGCACATTAAATCTTGAGAAGCACTGGTCTAAACCAGTGTTTCTCACCGCTGGCTGCTATGTATTAGCATCACTTGGAAACATTTTTCAAACTACCAATTTAGGCCCCACCTCACAGATTTCGACTTAATTTGGCCAGGGCGGGGATCAAGTATAGTGGTACTAAAAAGCACCTTTCTTTTTAGATGACTCTAACGTGGTCACCTGAACCTTCTGAGGTTGACTCTAACGTAGGGCCAGAGATGCAAACCACCTATATGGATGATGAAACCTTTTCTTTACTCCTTAGGGAACTAAGATTCTGTGAATACACCGTTCCCCTGGGTCTCAAACTAGCTCTAGAGGAGGCCCTCATGATACCACCTCAGCAGAGGTGAGAGAGTAAGGAACCATTGGTAGAGCCAGTACTGTGGAGAAATTAAAATTTAACTGGTGAGGGACAGCTTCAGGGTTAAGAGAGTTGGACCTCCTACCTTGAAACCTGGCTCCCCACCTGCCACTGTTCCATAGTGCTTGGAAAATATGAATATTTTATGTGCCTCAGTTGCCCCTTCTGTAAAATTGGGATTATACTAATGGGTTGTTATGCATATGGAAATTAATATGTGAAACCTGTACATGAAATGCTTTATCAGTCTCAGCTCTTATTCCTAATGTGTTAAAAATGTCTTTGAATTCTGTATGTCTGCTTATAAAAACACATAAGTTAACAAAATTCATTATCCTCAGGCACCCAACGTACAGAATATTTAAGCATACATTTGAAGCAACATGTGAATGTATACATATGCTGTGATTTATTAAGCATGTTACGGGAACTTTAAAACACCTCATTCAGCAGAAAGGAGGCAGAGGATTATAATCCTCATTTGACAGATGGGACACTGAGGCCCAAGTCCTCATGTTCCTTCAGTCTAGAAAGTGAAGAGAACTTGCACTGTGTGACAAGGGCCAGGCGAAAGACACAGGAGAGGAAGATAGATTCCTGTAGACCTTGTTTGTCAGGGAAGATCCCTTGGGAAAGGTCAGTGGTTGAATTGGACCTTGAGGGACAGAGAAGTTTTTTTTTTTTTAAGCAAGAATAGGCTTTTGATTGATCAGCAGGAGCAGGTGGAATCTAGGTGGGCAAAAGAATACAGAGATACTGGGGGAGGGGGGATTGTTTTGGGAAGTGATGTGTATAGGATAATAATAAAAAGAGTAGCTCACATGTAATGAATGCATACAGTGCCAGCTGGTATACTGGGTAAGTGCTTTGTATACCTTGTGTTAATTAATCCTCAGCAGTCCAGTCATGTAGGGCCTTTTTTTTTTTTTTAAAAATAGGAGCATTTAAAGAAAACTAAGTGACTTGTCCATAGTCAGACAGCTAGTAGGGGCAAAGTTAGAATTTGAACCCATGTCTGTGAGACTCTAAAGCTATCTGGCCTAACTGGCCACTTATTGACAGATGGGAAACATAGGCTAGGGAGTGACAGGCCGTGGGCCTGGACAGGTGGGGTGCGGCAGGTTGCAGAGGGCCTCCCTTGAGGCTGGCCAGTTGGGTTTTATCACGAGTTGATTCTAATCATAGTCACTTATAGGGCTTTGCTTTCTCTCCAAAG
Seq C2 exon
GCTGTACATCCTTTTGAAATCCCAGAGATCTTCAGTCTCCCTGTGGATTAAGGAGATGTGCAGTATTTAAAGTGGCTTCAGGAAGGCATGGAAGAGGACTGAGTGGGGAAAGCTTTTTGTGCATGCTGCTGGCTACCTCCAGCGGCTGCCTCCAGCCTCCATCAGCTGCACTCTGGGGAAGAGGAGGCTGCCTTCTACCTCCCAGCATCTCTGGATTTCATGTTCCTGTCAGCACAGAGGAGCTAAATGGCCTGTAGAGGCTGAAGGTCTGAGGCTCCTAAAGCTGGAAGAAAAGGCTGGGCCAGTCAGGCCAAGCAAGAACACAGTGTAACTTGTCTCTGAGTGCTTCATGGTTAAGGGGGCTAAGCAGGCACAAGGGCATGAGGATGGTTATATGTACAGACTGAGGGGAAGAAGCAGTGAAGATGAGACTTGCCATCTTCTTGAGTCAGTAGGCCTGCCTCAGGTGCCTAGGATGTAATTGCTCTGCTGCTTCTCATGGGGAGGAGTGGCCCTCATGACCTTGTTTACCTGGAAGAGTGTGGGATGAATGCCTCCTCCTATGGGGACTCGCAAGTGCTTTAGCAAAAGGATAAATTGCTAATTGTGGCATTTCGTGGATCAGCAGGATTATTTCTCCTTGCTAAAGAGGATTTTGTTGGTCCTGAATTCTGAGGAGGTGGGACTAGGAATGGGCTCCATGAGCCTGTGTATGACTCAGGGAATATTAGGACTTTGGCACAGCCTCATGGGTTGGGAGTAAGTCTTGGCTCTTCCCTAGCCTGAATGACAGACATCAGATCATTCTGGTGCTTTGTCCATGAAGATGTAGATTCTGAGCCCACCCAACTAATCTTTTCACTTGAGCACAGAAACAGCCCCGGGAATCGGACAGACCCGTGTCTTTCAGGTTTGCTTCACAGAGCCCCAGGGGTTGACAATAGGTGCCTTGGAGACTGCCTGCATGGGGATTTTTAAAAAGCTTTCTTTGTTAAAGGTTTGTAAACCACTCCTCTGAGCCTGTTTTCATTTTATAGATTATTCAGGGAACTGAACTGCACAGAGATCCAGAAAGTGGGTAGTGCAGGCTGTAGTGCTGATAACTACTGTACTACTTGGATCTTTGTGCTCCCAAATACCAAATGGAAGAGGATCTCTGAGAGTCCTTTGCAAAGATCTTGTAGGGACTTTAGGCTGGGGCCTTCGGAAAATTCCAGAGGATTCCAATGGAGATTTTGAGGGACTGACTCAGAAGAACAAAGAGAATGATAATGGTGATGTCCCTGCTTTTTACAACAGATCATGTTCTGATATATATGCAAATCTGTGTAAAGTAAACCCTACCTAAAATGTACTGGGGACCCAAGATGGACTGCCTGTATTGCTTCCAGGATAAAGTCCAATTTCTAGCTCTGGTTTTTATAACCTTGCTTCAGCTCACCTTTTCCGTCATCATCCCCTCCATCTCCTCTCCCACGCTGGGAAATGGATGGCTGCACTATACTGTGTGATGTTATTGCTATGTTCATGCCATCCCCTCTGCCTGGAATGCCCTTCTGCATGAATGCCTGTGAAATGTTGTTGCTCCTTTGTATGGCCTGGCTTCCGTGGTTGGCAGGAATCTCTTCTTTCGTGGTATTCCTGTCATCTTTGTGCATCACAGTCAGCTTTGTATTCCTAGCTTGTAAGCTACTTGAGGATAGGGGCATGTCTGAATCTATTTAATCTCTTGCACCTGTTTGGCAAATTGATGTTTTAAGTATTTAAATAACTAAAGCTCTCTCTACAGTACATACTCACTTTTGATTTATGAATTGGCAAAATTCAACTTTTTTCCTTGAATATTCTTAAAGTGAGATGAATTCCAAAGGAGAGTGTTCTGTGTGTGGCCTTCATTGAGTGGTTTTCTGTTACCAGAAAGCTCTTGGTGGCCTTCCTCTTCCCTGGTGTCAAGGTTGACTGTTATAGGAAATGGGAGGGGAGAGGGCCGTTTCTGCCACGCATTGTCCTAGGTTCTTAACATTATTTAATCCTTATAATGCAATGTTATCCTCATTTTACAGATGAAACCTGAGACCAAAGAACATGTAACACATAAAGTACATTGCAGAGTTAGGATGTGAACCCAACTCTGATTCTAAACCTAATGCTCTCACTCTTTCATTCAGAGGTTCAGTCAGTTCTTTGTAGGCTGTAGATCCAGAGAAGCTGCCGTAGCCAACAATGAAGTTGTTAGTTTTTAAAACATCTATGTGGTAAGTTGGTCTGGCACTTAAAAATGTATTGTTTCCCAGGCACGGTGGTTCACACCTGTAATCCCAGCATTTTGGGAGGCCGAGGCAGGCGGATCATTAGGTCAAAAGATTGAGACCATCCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAGTACAAAAATTAGCTGGGTGTGGTGGCGCATGCCTCTAGTCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATCATGCTACTGCACTACAGCCTGGCAACAAAGCGAGACTCTGTCTAAAATATATATATATATATATATTGTTTACTACTCACCACAGATCTGCAGGAGTTCACTGATCTCTAGGATCTGCCTTAACTCCAACTTACATGTTTTGGTCACTATTACAAACTGTCATCCCAGAATGATGCTGCAGAGGCTAGGGCTAGGACACAGACCAGTGTTTCCATGTGGGAATTCCCTCCCAGTATTTCTTAGGAAATGTATGTTTTTTGAATCCATAATCCCTAGAAAAATCAGTTGAGGAAATGAGAAGTATTGTAATTATTCTGTGAATAGTAACACTTACCATTATGGAGACATCACTAGTTTGAAAGAATCCAACTTCATCAAATATTAACGTACCGAGTTGAAGGCTACAAGAACTGAGACAGGAGCATAGCAGAGAGAAACGGTCACCATCTCATTAGCCCTATTTTTGGTTGTTGTGATGCCATTACATCTGTATATCTGGCCATATCAGCTGCTAATGGTGAGTTCTTGCAAACAAAATGATTTGATAAACAACCTACCATACTTTATACAAATCTTATGGTGTTCCGAGAAATAAACTTTGGAAGCAAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
-LOC253039:NR_024408:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)