BtaINT0003590 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6Y4]
Coordinates
chr8:112134053-112138177:+
Coord C1 exon
chr8:112134053-112134102
Coord A exon
chr8:112134103-112137369
Coord C2 exon
chr8:112137370-112138177
Length
3267 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
ACTCTGCTTTCTTTCCAAAGGTT
3' ss Score
10.82
Exon sequences
Seq C1 exon
TTAATAAAGACAAAGACTTCCAAGATCCATATGCTTTCCAGCTACATCAG
Seq A exon
GTAGTAGCGCCATCTCCCCCTAGCCAGGGGCCTGCTGGCTACTAAGTGAATGAGCTTGTGAAGTAGGTGACCTTGAGCCTGGTCACCAGCCTCCCATGTGACCTTGGCTATGACCCTGTCCCATAGACTCTATTTATAAAATGAGTTGTTGTTCTTTTTTAAATTAGTTTATTTTTAAAAATATTTACTTGTCTGCACCAGGTCTTCCCTGATATTAGGGCTTCCCTGATAGCTCAGTTAGTAAAGAAGCCGCCTGTAATGCAGTTCAATTCTGGTCAGGAAGATCTGCTGGAGAAGGGATAGGCCACCCACTCCAGTATTCTTGGGCTTCCCTGGTGGCTCAGCTGGTAAAGAATCCGCCTGCAATATGGGAGACCTGGGTTTGATCCCTGGGTTGGGAAGATCCCCTGCAGAAGGGAAAGGCTACCCACTCCAGTATTCTGGCCTGGAGAAGTCCATGGACTGTGTAGTCCATGGGGTCACAAAGAGTCAGACAAGACTGAGCACCTTTGATCCACTTCACCAGGTCTTCATTGCAGCACGCGGAATCTTCAGTTGACGTCTGTGAGATCTAGTTCCCTGACCAGGGATGGAAACCAGGCCCCTGCATTCGAAGTGCAGAGTCTTAGCCACTGGACCACCAGGGAGGTTCCTGTAAAATGAATTATTACTTTCAAACCAGTGGTTCTAAAAATTTTGGTCTCAGGATCCCTTTACACTTTTAAAAATTACTGAGGACCCAAAAGAGCTTCACTTATGTTGGTTCTCTCAAAGTTTACTGGATTAGAAGTTAAAGCTGAGAAATGTTTAAGATATATAGTTTTAGTTCACTGAAAATAACAGTAATAGAATAACAACATATGAACGGAAGTAAATGCAGGCGCACCTTGGAGACATTGCAGGTGTGGTTCCAGACCACCTCAGTGAAGCGAGTGATGTCACTTCCTGATTTCCCAGGGTGTGTGAAAGTTACACGTTTACCCTACATTGCAGTATAAGTGTGTAACAATACCATTGTGTCTAAAGAAAACAAAGTACGTACCTTAATTTAAAAATACAAAACAAAAAACAGTTATAGTAACATCAAAGATCACCCCTGTCAGATCACCATAAGAAATAGAATTATCATGAAAAAGTTTGGAATTTTGCAAGAATTAGCAAAACGTGACACAGAAGCATACAGTGAGCAAAGCTGGTGTCACTAGACTTGTCCAGTGTGGGGTTACCACACACCGTCAGTTTGTAAAACACGCAGTATCTGCAGTGAAGTGTAGTGCAGTGAAACAGTATGCTGGCAATGCCTTCTTATGGGAAGTAACCATATTTTCCAAAAGTAAAGAAAGTGCGAAGAATGGCATCTTTCTACATTTTTGCAAAATCTGGCTTAATAAGAGAACTGGATCTCCTCAAAAGCATCTCTTAAGTTCTGAGACACTTTCAAGTTATGAAAGTGATATATTCAAATTTTCAAAACTTCTGATTTTTGCTTAAAAACATGAATTTTTTCTTAGTGTTCATGGGGTCGCAGAGTTGGGCAGGACTGAGCGACTGAACTGAACACTGCACAGCACTATGCAGCGTGTGGTCTGCTATGCAGCAGAGGGGCGCAGTTGTACGTATGGTCTTCTCTTCCATGTTCTTTCCCATCATGGTTTATCACCAGATACTGGATGGAGCTCCCTGTGCCGCACAGCAGGGCCTTGTGGTTTGCCCACCCTGCAGATAACACTTTACATCTGCTAATCCCAGACTCCCAACCCTTCCCTCCCCTACCCCTAAAACATGAATTTTTTTTAAGTGAATTTTTTGATTGGCAATAAACGATGTAAATTGTCTTCATCTGAGTGATGGCCAAATATTTGTTCATATTTGAGAAAATGTGTACCTAATACTCAAACCTGAGTCACCTTAATTTGTGAAATTGACAGACAAATGATGGTTACTCAAGCTGGAAAGTAAAAATGGTGTACTGTGGGAAGAAGGTCTGGTTTAGCTTGTGACTCAGATCAGGCAAGTTTAAGAGCACTGAGCTCAGGTGTGACAGCAGAAGCACTGTATGTGTAGTTCCCAGTTTGTCACACAGAATAGTACAAAGACACGCTCAAGAGCCAAACTTTAATAAAAATAGGAATTTTTGCCACATTATCAGAAATGTTCTTAGGTGAATTTGACTTTAAAAAAAATGCATGAAAAAGTAAAAAAATGCATGTATATATGCGACGGTGAAGAATATCGTGACGGCCAGTAGAGTGTGGGGCTGCTGTCCTGATGCATGCTAAGGTGTGACCAGTTTTACCCATCATTGCTTTTGCACCATCAGTGCAAATGTCAACATAGTGAAAAGATAAATAACAATATTGTTGTGAAAATAGTTTTGGCCCCTTGGACCTCCTGAAAGAGGCTTGAAAGTTCCCCAGGGGTCAGAGGACCACTGGTCTGGGTCTCCATGAAATAAATTAGGAAAATTCATTCTTCTCAGGCACTGGATAAAATTACGCGACCTGCTCCTACTGTTCAAGCAACTGCGTGCACATGTTGTGATTTAGTAAGCAGCCTCTCATGAGAGCTTTTCAGTGCCTGAAGTCAGGAGAGCAGAGGACTGTTGCCCCAGCTCAACAGGTGGGACTGAGGCCGTGTCTTTTGCTTTGTCAGTTTGCAAAGTGAAGAGAGCACGTGTGCTCAGGACTAGGTGAGAGAGACGAGGAGAAGGGAGAGACTGCTGTGGGTTTGGATGGTCAAGGAAGATCCCTGGGGAGAGGTCATTGGTTGCAATGAGCCTTGAGGAGTAGAGAGGCTTTCGATTTAGCAGCAGGAGTAGAAGGGGAACAGAGAGGTGCAGGGGCAGGCGCGGTAAAGAGTGAAGGGTAGTGATAAATAAAGACAGCAGCTGACTGTTGCCAGATGCTCACAGTGCCTGTCGGTGTGGCTGCTAAGTGCCGTGTATACCTCGCTCATTTAATCCCCAGCAATCCAGTACTATTTTCACCCTCCTCTTGTGGGTGCTTCAGCGAAATGAAGAGATACGTCCGTGCTTACATGGCTAGTAAGTGGCAGACTTAGAATTTGAACCCATGTCTGTGAGACTCTAATGCCATCTGGCCTAATTTTACTTGGTGACAGATGGGTCAGAGGCTTAGGAATGGTGGGCTGTGGGGCCGGACAGGTGGGCTGCAGGCCGACTGTGGAGGGGCTCAAGGGAGGCTGGCCAGTTGGGTTTTATGGCACAGGCTTATATGCCACTCACGGGACTCTGCTTTCTTTCCAAAG
Seq C2 exon
GTTGGTGCATCCTTTTGAAATCCCAGAGCTCTTCAGTCTTCCCATGGACCAAGGAGATGTGCACTATTTAAAGTGGCTGGAGGAGGGCATGGAGGAGGAGTGAGTGGGGGCTTTCATGCCTCCTGCTGGGTGCCCCTAAGAGCCATCATTATCTGTTCTCCAGCTGAAGGGCGGCTTCTGTCTCGCATCTCTGGATTCCATGCATTTCTCAGCACAGAGGAGCTAAGTAACTTGTGGAGGGTGAAGGTCCAAGACCCCTGAGGCTAGAAGAGGATGCTGTGCCAGTCAGGCCAAGCAAGGACCCGGTGGCACTTGTCTCTGAGTGCCTCATGCATAAAGGTGGCCAGGAGTGGCAAGGTCACAGTGAGGGTGCGGCTGGTCTTCCCTGTTCATTGAGCCTAAACTGAGTACCACGTATGTTATCACTCTCCTGCTTCTGGTGAGGAATCACCTGGCGGCCTGTCACCCAGGAGTGTGTGGGGTGAAGGTCACCTTCTAGGGGAGCTGGAAGCACTCTATCCACAGGATGAATCGCTAATGGTGGAATGTCAGGGACAAGCAGGATTATTTCCTCTAGCTGAAGGTGGTGGTTGTTATTCCCGAGTCCTGAGGAAGTGGGCCTGGGAAAGGGCTTCATGAATGCAGGTAGGACTGGGAGGGGAGGGCTTAGACACAGCCCCAAGGATTGAGAGTTGGTCTTGACTCTTTCCTAGCCCGAAGGTGACAGACCTCAGAAAGCTAGGGTCCCTTGCTCAACAGAGACATGGGTTCTGAGCCTACCACACTGACCTTCTGATGTGAGCATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016957:ENSBTAT00000022554:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(15.7=100)
A:
NA
C2:
PF0309110=CutA1=PD(30.4=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]