MmuEX0026870 @ mm9
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:40450768-40455918:-
Coord C1 exon
chr2:40455774-40455918
Coord A exon
chr2:40453933-40454031
Coord C2 exon
chr2:40450768-40452594
Length
99 bp
Sequences
Splice sites
3' ss Seq
AATTTTCTGTTTATGTACAGTCC
3' ss Score
6.1
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
AACAAAGACAATTAGAAGGCAGCCTATCATCAATGGAGGAATAAATGTAGAAATCGGCAATCCATCATACAATATGTATGAAGTGGACCACGACCACAGTGATGGGGGTCTTTTAGAACCAAGTTTCATGATAGATCCAGTAAAG
Seq A exon
TCCAGGTACATAGGGGGAGGGTCCAGTGCTTTCAAGCTCCCACATACAGCACCGCCCATCTACCTAAACTCTGATTTGAAAGGACCACTAACTTCTGGG
Seq C2 exon
CCAACAAATTACTCCAACCCAGTATATGCAAAATTATATATGGATGGACAGAACTGTCGAAACTCCTTAGCAAGTGTGGATGAACGGAAAGAACTTCTTCCAAAGAAAATTGAAATTGGCATCAGAGAAACAGTAGCATAATGAAGGACACTTTTCTATGCTGTATAAATGTATAAAATATAAGGATTACTTTTATATGTTCCAACAGTATTATACTTATTTTAGCATCAACATCATCTCTTTATCTTTTTCCTCGTTAATTGTTTTCTGAGTTTGGGGGGTTTTATTTTTTGCTAATGAATATTGATTCACCATTTTTAAGGTATTTTTATGAAAAATAACTGCACTACACTAAAACTTACAATGATGCTGCTGATATGACACACCTTTAAATTTGTTAAAACCTAAAAACAACAAAACCATATTCCTTTGTAGAGTTAATATGAGCAATCTATTTTATAAGAATTTTTTGTTCTCCATAATCAGCAAAGTACTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PD(11.8=18.4)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATGAAGTGGACCACGACC
R:
AAGTTCTTTCCGTTCATCCACACT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: