DreEX0043719 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36876418-36885203:+
Coord C1 exon
chr9:36876418-36876568
Coord A exon
chr9:36879427-36879501
Coord C2 exon
chr9:36885063-36885203
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGCGACTCTGTGTGTTTCAGGGC
3' ss Score
8.76
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGGTAAACGTGTACAACGGCAGCCCATAACTAATGGAGGCATTAATGTGGAGATCGGCAATCCATCCTACAACATGTATGAGGTGGACCATGACAACCACGCAGATGCCGGAAGTCTACTCAAACCAAATTTCACACTCGACCCCCACAAG
Seq A exon
GGCTGGTGTGTAAAATCCAGTGACCCTTGCACGCTGAATATTCACACTGTCCCTAAGGAAGTAATACCTGGACAG
Seq C2 exon
CCAATGAACTACTCCAATCCGATGTACGCGAAGATGTACCTTGATGGTCAGAACTGTCGCAAACCAGTCATCAACATTGACGAAAGGAGAGAGCTACTCCCAAAGAAACTTGAGGGGACGATTCGAGAAACCGCCGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.000 C2=0.227
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PD(24.1=39.2),PF118573=DUF3377=PD(15.2=13.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000139033fB3636
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATCGGCAATCCATCCT
R:
GGTTTGCGACAGTTCTGACCA
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]