RnoEX0002995 @ rn6
Exon Skipping
Gene
ENSRNOG00000039050 | AABR07051878.1
Description
NA
Coordinates
chr3:25201596-25205050:-
Coord C1 exon
chr3:25204906-25205050
Coord A exon
chr3:25202851-25202949
Coord C2 exon
chr3:25201596-25201736
Length
99 bp
Sequences
Splice sites
3' ss Seq
AATTTTCTGTTTGTGTACAGTCC
3' ss Score
7.23
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
AACAAAGACAATTAGAAGGCAGCCTATCATCAATGGAGGAATAAATGTAGAAATCGGCAATCCATCATACAATATGTATGAAGTGGATCACGACCACAGTGATGGCGGTCTTTTAGAACCGAGTTTTATGATAGATCCAGTAAAG
Seq A exon
TCCAGGTACATAGGGGGAGGGCCCAGTGCTTTCAGGCTCCCACACACAGCACCGCCCATCTACCTAAACTCTGATTTGAAAGGACCACTAACTTCTGGG
Seq C2 exon
CCAACAAATTATTCCAACCCAGTATATGCAAAATTGTATATGGATGGACAGAACTGTCGAAACTCCTTAGGAAGTGTGGATGAACGGAAAGAACTGCTTCCAAAGAAAATTGAAATTGGCATCAGAGAGACAGTGGCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039050_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.030 C2=0.043
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PD(14.3=20.4),PF118573=DUF3377=PD(16.7=16.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000040023fB143
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGTCTTTTAGAACCGAGT
R:
ATGCCACTGTCTCTCTGATGC
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]