DreEX0043700 @ danRer10
Exon Skipping
Gene
ENSDARG00000094171 | lrp1ba
Description
low density lipoprotein receptor-related protein 1Ba [Source:ZFIN;Acc:ZDB-GENE-050208-608]
Coordinates
chr22:14339377-14341713:-
Coord C1 exon
chr22:14341563-14341713
Coord A exon
chr22:14339942-14340049
Coord C2 exon
chr22:14339377-14339517
Length
108 bp
Sequences
Splice sites
3' ss Seq
GAATCAGTGCTGTTTTTCAGGGC
3' ss Score
6.22
5' ss Seq
CAGGTGGAT
5' ss Score
3.56
Exon sequences
Seq C1 exon
AGGTAAGCAGGTTCAGCGGCAGCCCATGGCCAATGGAGGCTTGAACGTGGAGATCGGGAATCCGTCCTATAACATGTATGAAGTTGAACACGACAATCACGTAGACGTCGGAAGCTTTCTTCACCCCAGCTTCACACTTGACCCTCACAAG
Seq A exon
GGCTGGTGTGTGAAGTCTAGCGATCCGCGCAACTTGCCCCCCGCTCGCCCTTTGACAGCACACACTTTACCAATCCAGAACGTTCCAAAGGAGCTGATTCCAGGACAG
Seq C2 exon
GCTATGAACTACTCCAACCCCATCTACTCAAAGATGTACCATGACGGACAACACTGTCGAAAGCCCGTCATCAACCTCGACATGAGACGCGATTTACTCCCAAAGAGACTGGACACGACCATTCGAGAAACGGCAGCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094171_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.250 C2=0.141
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PD(27.4=51.0),PF118573=DUF3377=PD(14.3=13.7)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTTGAACGTGGAGATCG
R:
TCGAATGGTCGTGTCCAGTCT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]