GgaEX0018743 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33463705-33470396:-
Coord C1 exon
chr7:33470252-33470396
Coord A exon
chr7:33469166-33469264
Coord C2 exon
chr7:33463705-33466654
Length
99 bp
Sequences
Splice sites
3' ss Seq
AAAATTTTCTGTTTATGCAGGCC
3' ss Score
6.87
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GACAAAAACTATAAGACGGCAACCCATTATAAATGGAGGAATCAATGTTGAAATTGGCAATCCATCATATAACATGTATGAGGTGGGCCATGATCACAGTGAAGGTGGTCTTTTAGCCTCTGATTTTACTGTAAATGCAGAAAAG
Seq A exon
GCCAGATACATAGGGGGAGGGCCCACTGCATTCAAGCTTCCCCACACAGCTCCTTCAATCTACCTAAACTCTGACTTGAAAGGACCACTATCAACAGGG
Seq C2 exon
CCAACAAATTACTCCAATCCAGTATATGCAAAGTTATACATGGATGGACAAAACTGTCGAAACTCCTTAGCAAGTGTTGATGAACGAAGAGAACTCCTTCCAAAGAAAATAGATATTGGGATAAGGGAGACTGTGGCATAATCTGCTGTTACCTTTTATACTCTGTATAAATGTATAAAATATAAGGATTACTTTTCTATGTACCAACAGTATTATAATTGTTTTGGCATCAGCATTACCTCTGTTTTTTTGTTCTGTTGATTGTTTTCTGAGTTTTTCTTTTGCTGATGACTTTTGACTGACCATTTGTAAGGTATTTTTATGATAAAGAAACTGCACTACAGTACAATTTACAACAATGCTGCTGAAATAACACACCTTTAAATTTGTTAAAATTGCAAACAACATATTCGTTTGTAGCGTGAAAATGAGCAATCTATTTTCTATGAACTTTTTTGGTTCTACTTAATCAATGAAGATGGTATTTGCACTTTTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGTCTTTTAGCCTCTGA
R:
GCCACAGTCTCCCTTATCCCA
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]