GgaEX0018744 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33463705-33470396:-
Coord C1 exon
chr7:33470252-33470396
Coord A exon
chr7:33467083-33467132
Coord C2 exon
chr7:33463705-33466654
Length
50 bp
Sequences
Splice sites
3' ss Seq
GTTGTATATTTGGGCCACAGAAT
3' ss Score
4.08
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GACAAAAACTATAAGACGGCAACCCATTATAAATGGAGGAATCAATGTTGAAATTGGCAATCCATCATATAACATGTATGAGGTGGGCCATGATCACAGTGAAGGTGGTCTTTTAGCCTCTGATTTTACTGTAAATGCAGAAAAG
Seq A exon
AATTCGAAAACATGGTCAGCTATTGATGGGATGCTGATGTCTTAGAACAG
Seq C2 exon
CCAACAAATTACTCCAATCCAGTATATGCAAAGTTATACATGGATGGACAAAACTGTCGAAACTCCTTAGCAAGTGTTGATGAACGAAGAGAACTCCTTCCAAAGAAAATAGATATTGGGATAAGGGAGACTGTGGCATAATCTGCTGTTACCTTTTATACTCTGTATAAATGTATAAAATATAAGGATTACTTTTCTATGTACCAACAGTATTATAATTGTTTTGGCATCAGCATTACCTCTGTTTTTTTGTTCTGTTGATTGTTTTCTGAGTTTTTCTTTTGCTGATGACTTTTGACTGACCATTTGTAAGGTATTTTTATGATAAAGAAACTGCACTACAGTACAATTTACAACAATGCTGCTGAAATAACACACCTTTAAATTTGTTAAAATTGCAAACAACATATTCGTTTGTAGCGTGAAAATGAGCAATCTATTTTCTATGAACTTTTTTGGTTCTACTTAATCAATGAAGATGGTATTTGCACTTTTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCATGATCACAGTGAAGG
R:
ACACTTGCTAAGGAGTTTCGACA
Band lengths:
138-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]