GgaINT0048851 @ galGal3
Intron Retention
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33466517-33469264:-
Coord C1 exon
chr7:33469166-33469264
Coord A exon
chr7:33466655-33469165
Coord C2 exon
chr7:33466517-33466654
Length
2511 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
3' ss Seq
TATGCTTAATTTCTCTGCAGCCA
3' ss Score
8.06
Exon sequences
Seq C1 exon
GCCAGATACATAGGGGGAGGGCCCACTGCATTCAAGCTTCCCCACACAGCTCCTTCAATCTACCTAAACTCTGACTTGAAAGGACCACTATCAACAGGG
Seq A exon
GTGAGAAATGATGATTCAAATCCATTTCATTCCATCACAACCCCTTGTTAAAGAAAGTTTGTCTGTCATTTTAGAATAGAGGCATTTTCTGTTTGCTTTCTTTTTTATTTTGTTTTTGAGTTTTAAAAGGAAAAATGACAGGAAGTTATATGTTTTCATTTTGAAATAAGGGTTTTCTCTCTGCATACAAAATTAAATCTATACCTATCATTTTAACGTCATCTAAAACTGCAAATCTGTCTTCACAAAAGCTTGAAAAGCCAGTAAGCAATGTGATGACTTTTCATAGCATTATATAAGGTTAGTATAGCATTCACAGCTATATATATATTAATATATTTTCAGTTTATGTGCAATTACAGACACTTAGTGAAGCTTATCAAGGTGAAAGAAGTTCCCAAGTAAACAGAAAAAAATGTCTTTTCATTTTAGAGGGATTTGATACACATTAAATGAACAATTTCCTTTAATACTTGCACTGCGTTCTTGGATTGTTCAGCTTTCAGTGAATTTTTGACAAAAAATCTGAAGGCAGTTACTTTTAAGACAGCAAGACTATGGCTACAGTTCATCAGGAATTCAATGTTTGCAAACATTACAGTTGAAAATTCTAAAAAGGAACATCAGTTGATATTCATTTTCATGTGCCTCAGTAAATATATTCATCCTTTGTGCCATTTGCATTGCATGACTGTAATACGTTCTTTAGTATTTGAAAATTTAACCATTTGTAAAGGGTGTGATGTTTCTGATGGGCCACAGAACCATTGATGAGCTAGAATCAGTGCCTTTCTCCAGCATTAACAGTTTCTGTTGGTCAACTCTCTCCAGTTATGTTCTGTACCTCACTGTACTTCATTAGGACCCACACACAGAGTATATCATGAGACAGAGCCCACTATTATATAAGAAGTAACACAGTGAGGCACTATATAAGTGCCAAGAGTATTTGTACTGTTGTAGTTATCATCCTTAACGGTAGTGATTAATGACACAAAGTCCCGTGAATTGGCATAAACCTAAATTTCTTTTGATAAGCATTATGAAAAATATAAAGATTCAGATTCAATGGGAATAGACAAGTACAACTGAGAACTGGCTCTTATAACTTGCTACAGCAGATATCATATATTTGTGTTCCATTAATACAGAAGAGTTACTTGTTTTTCAAACCTTTTTTCTTCCTCTATTCTAAGCAAGAATAAAGCAGCAGGCACTCCCTTTGTCACCTGCAGTAGATGGAACAGGCAGCCTTTAGCTAACCCCAAGGAACAGGTGCTTTATCCACCCAGCCTAAAGAAAATCTTAACCCTGGGTTCAGAAGAAGTATTGATCAGTAGGGAGAACATGAGTTAAGATTCTAAACTTTTTGTTCATTTGTTACCCAGTGTGCATTCAGCTTATTGACTAATCCAACCAATTCTGTTTTGGGTAATGTAAAATGTAGCCACTTCTTACATACACAAAAAATATATATAATTTACGGGTTTTTTTTCTGTCTTACTGTTCTTCCACTCATAGTATTTGTATAAGAAAAGCTGCATTGTTTAATCCTTTATAAATTAGAGGAGTATTTTGACGATAAACTACACTTTTCAGTTATTAGAGGTAAAAAGCTGAATATCTGGTTGGATAGCAAAGATCTTCTGGGAGACGATAAAAGCACAAAGTATGAAGAAATTGAGACATTTATATTATAAATCTTGGAAGGTGCTTTTGCCATAGCATTAGTGGTAAGGGAGTGAGTTCCATCCATTTTACGCATCCTTTTATACTGTTGAATGTAGGACATTTCTCATATACTCAAATGCTTTGCAGATTTAAAAATGGACTTGTCCTATAATGAAGTACCATTCATTGCAATAGATTTGTCATTACAGTCCAAGTTACCAAACTTGTTGAGAAAATGCTTCTCAATTTGTAAATACTATGATATGTTAACAGTTACGCTGGTGTATTTTTAAAGCAAGTTTAATTTACATTACAAAAGTATTGAATTTTTGGTCAAATCATGTTGTATATTTGGGCCACAGAATTCGAAAACATGGTCAGCTATTGATGGGATGCTGATGTCTTAGAACAGGTAATATATGGAAACTGTTGGTTGCAGTTTTCTACTGTTAAACTTGTCACATGGTCTCACAGTGCACCTTCTCTATAAGCTTTGTCATATCTATTCTGAAATCTTCCAGTGTAATAAGGTGGACAAGTGAACTTCAGAGACATTATTCAAGGTTTTTTGTTTTTATTTTTGTCATTTCTGTTACGGTTTTAATATCATAAAATGCTGCATGTCATGCCATTGATTATTTTAATAGCATGTCTCATATCACAAATTTAATTTGAACTAAATAATTAACTCATTTTTTGCAGAAATCCAGGTATCTATTAAATATGTCCAATTATATTTTATGTGTACTTGTTCTAGCTTTAACCACACCATTTCCATTTCCATCAATGTTTATCTTGGTTTAATTTGTCTGATCTAATATATGCTTAATTTCTCTGCAG
Seq C2 exon
CCAACAAATTACTCCAATCCAGTATATGCAAAGTTATACATGGATGGACAAAACTGTCGAAACTCCTTAGCAAGTGTTGATGAACGAAGAGAACTCCTTCCAAAGAAAATAGATATTGGGATAAGGGAGACTGTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407:ENSGALT00000020272:89
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]