BtaINT0086873 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024632 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:57009368-57011911:+
Coord C1 exon
chr2:57009368-57009403
Coord A exon
chr2:57009404-57011764
Coord C2 exon
chr2:57011765-57011911
Length
2361 bp
Sequences
Splice sites
5' ss Seq
CAAATGAAT
5' ss Score
-6.71
3' ss Seq
ATAAAAACATTTTTTTTTTTCTT
3' ss Score
-11.39
Exon sequences
Seq C1 exon
AAATGGATAAATTTCTCCCTCAATGGTACCTTACAA
Seq A exon
ATGAATTGAAATAATTAATAAATTTTATTTTTAAAAAGGTTTGTCTATAGAGACATTCACAGAATACTTTGAAAAGCTCAGAAAAGAGGAACTGGTATCTATTGATTTTATACACAAACTCATCTCAGTCCTTACTTAGATTGTTTTTAATATCATCTAAGTGAGAATTTGTGGGGAAATAAAGAGACGATATTGACCTGAGTTTATGTTTAAAATCTTTTTCCTTAGATATTTGTCCATGTTTCAAACTTTATGATGATTCATTGTTAAGAGTTGATAGATTTTTAAAAATATGTATGTTCATTAAAATCCCTCAACTTTTAATCTAGCTTTTTTATTTCCTTTTTGGCCACTAATAAGTATTCTGTGATGAATATGAGTGTACCAGATTGACTTTTTCTGCCCTTAGACCCCAAAAAACTCTAAAACCATTGTTCTTGCATGGAGTTTAGTGAGCCAAAAAATTAATTTTCTTTAAACTAGAAAGTCAGATTTCTCAAAAAAAAAAAAAAATTCATTTTTATATCTCACATTTTAAATTTCATCTGTATTTTCTAAAAATATAGAAGTCATGCACCTTTAATTAGAGCCAGTCAGATATTTGAGTGTCCGGAAGGGGCTCCTATCAGAACTTTTCAAACAGAAAACTTAAGTGAGGGAGGCTGATGCATTTTTCACAGGGCTCTTAGCAAATATATGCTTTTTGGGGAGGGAGAATGAAGTTAAATAAATGGAAATGGGTGTAGGTTTCTAGGTACATGTTATAAGTAAGCTAGACTAAGAGAAATGTCTACTGTAAAGTATGGATCTAATATTAATAGATGTTTCATAAATTATTGAATCTACCATAAATATACTGTTGATGCCCCAGGGCTGAAGAACATAGCTTATGTTATTTTTATGACTTAACATGAGTTTGTGTCAATGAAAATAGTTCCATGATATTAGATCAGAAACTAAAATTCTCTGTTTACACACAGGCCAGGTACATAGGGGGAGGGTCCAGTGTTTTCAAGCTTCCACACACAGCGCCGCCCATCTACCTAAACTCTGATTTGAAAGGACCACTAACTGCTGGGGTGAGAGAAAACTCATTACTCCATATCCATTCCATCACAGAATGCCTCACAGTCAAAAATGATTACTAGACCTAGATAGGGACTTAGCTTTAATGATTTTTAATTAACAAAAGGTTTCAAAACTGCATTAAACTTGGGAGTTTATGTGTCCTGCTTATGCAAGATTACATGCGAAAAAAACGTTATCATTTTAGGCAAGCTATTCAGTAGAAATATCTCTTCTCCAAAATTTGAAAATGTTAAAGCTCCGTAACAATAAACATGAGCATTTGCTATTCTTAGAATAGAAATCTCTAGCCAGAAATGTAAACTGAAGAGTTTACATTTAAATTTATGTTTGGCTTTATTTTCTATTAAGATGCTTCGTTTAGTATCTGCAAATATGGTGTCCTTTTAAATAAAAATACACTACAAAATGTGGCATCATATGGAGACATTAGAAATGGTGTATGAAACCATTCTTAAAAACTTTTTATGTAACTGGTTTCTAGAGAAAAGGGCTTTGTCTAAAGTTTGTTGTTGTTTAGTCACTAAGTCATGTCCAATTCTTTTGCGTCCCCATGGACTGCAAGACTCCTCTGTCTATGGGATTTCCCAGGCAAGAATATTGGAGTGGGTTGCCATTCCTTTCTCCGAGTGATCTTCCTGACCCATAAATCAAACCCCACGTCTCCTGCATTGCAGGCAGATTCTTTACCATTAAACCACCAGGGAAGTCCTGTCTAAAATTGCGTGGTTCATATTAGACAGGAGAGGGATTAAAGACGATATTAAGATTCTTAGGATTGAATGTTCTCACCCTTGTACCTCTCTCTCATCAGCTGTTTTTCATTCTCATTTTTTATCATGTTTGTCTCATTTGCATGGATCAAAAAATGTAATACTTCTTTATTATGATAAAGGTTTAACATTCTGTTTTATAAAGACAAAATTTTAAAATGCAACTATGTAACAATCTTGGGTTAAGTTCATAAGACAATTTGGTTTAATGTTTCCTGCTTTTATATAAAGTTGCAGTCAATATACCTTTAATGAAGATTTCTTTAGGCTTTCAGTATGTCAGAGCTCCCCTTAGGTTCACAAGTTACCTGAGAAACACACAATTATGTTTTTATCTAATACATACTAAAGTTGATGAAAGCATATAAACAGAATTTAAATTATATTTATATAATTATTATTTAGTAAGTTAAGTACAGTGCATATACATGTTAACATGAAAAGATATCATTGAAGATAAATTAAGGTAGTCAAAACAGGTAATAAAAACATTTTTTTTTTT
Seq C2 exon
CTTCAGCCAACAAATTACTCCAATCCGGTATATGCGAAATTGTATATGGATGGGCAAAACTGTCGAAACTCCTTAGGAAGTGTCGATGAAAGGAAAGAACTGCTTCCAAAGAAAATAGAAATTGGAATCAGAGAAACGGTGGCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024632:ENSBTAT00000034302:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]