GgaEX0018744 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31350097-31356491:-
Coord C1 exon
chr7:31356393-31356491
Coord A exon
chr7:31354310-31354359
Coord C2 exon
chr7:31350097-31353881
Length
50 bp
Sequences
Splice sites
3' ss Seq
GTTGTATATTTGGGCCACAGAAT
3' ss Score
4.08
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCCAGATACATAGGGGGAGGGCCCACTGCATTCAAGCTTCCCCACACAGCTCCTTCAATCTACCTAAACTCTGACTTGAAAGGACCACTATCAACAGGG
Seq A exon
AATTCGAAAACATGGTCAGCTATTGATGGGATGCTGATGTCTTAGAACAG
Seq C2 exon
CCAACAAATTACTCCAATCCAGTATATGCAAAGTTATACATGGATGGACAAAACTGTCGAAACTCCTTAGCAAGTGTTGATGAACGAAGAGAACTCCTTCCAAAGAAAATAGATATTGGGATAAGGGAGACTGTGGCATAATCTGCTGTTACCTTTTATACTCTGTATAAATGTATAAAATATAAGGATTACTTTTCTATGTACCAACAGTATTATAATTGTTTTGGCATCAGCATTACCTCTGTTTTTTTGTTCTGTTGATTGTTTTCTGAGTTTTTCTTTTGCTGATGACTTTTGACTGACCATTTGTAAGGTATTTTTATGATAAAGAAACTGCACTACAGTACAATTTACAACAATGCTGCTGAAATAACACACCTTTAAATTTGTTAAAATTGCAAACAACATATTCGTTTGTAGCGTGAAAATGAGCAATCTATTTTCTATGAACTTTTTTGGTTCTACTTAATCAATGAAGATGGTATTTGCACTTTTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'119-141,'119-140,120-141
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000020272fB2223
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACACAGCTCCTTCAATC
R:
ACACTTGCTAAGGAGTTTCGACA
Band lengths:
137-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]