GgaEX0018743 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31350097-31357623:-
Coord C1 exon
chr7:31357479-31357623
Coord A exon
chr7:31356393-31356491
Coord C2 exon
chr7:31350097-31353881
Length
99 bp
Sequences
Splice sites
3' ss Seq
AAAATTTTCTGTTTATGCAGGCC
3' ss Score
6.87
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GACAAAAACTATAAGACGGCAACCCATTATAAATGGAGGAATCAATGTTGAAATTGGCAATCCATCATATAACATGTATGAGGTGGGCCATGATCACAGTGAAGGTGGTCTTTTAGCCTCTGATTTTACTGTAAATGCAGAAAAG
Seq A exon
GCCAGATACATAGGGGGAGGGCCCACTGCATTCAAGCTTCCCCACACAGCTCCTTCAATCTACCTAAACTCTGACTTGAAAGGACCACTATCAACAGGG
Seq C2 exon
CCAACAAATTACTCCAATCCAGTATATGCAAAGTTATACATGGATGGACAAAACTGTCGAAACTCCTTAGCAAGTGTTGATGAACGAAGAGAACTCCTTCCAAAGAAAATAGATATTGGGATAAGGGAGACTGTGGCATAATCTGCTGTTACCTTTTATACTCTGTATAAATGTATAAAATATAAGGATTACTTTTCTATGTACCAACAGTATTATAATTGTTTTGGCATCAGCATTACCTCTGTTTTTTTGTTCTGTTGATTGTTTTCTGAGTTTTTCTTTTGCTGATGACTTTTGACTGACCATTTGTAAGGTATTTTTATGATAAAGAAACTGCACTACAGTACAATTTACAACAATGCTGCTGAAATAACACACCTTTAAATTTGTTAAAATTGCAAACAACATATTCGTTTGTAGCGTGAAAATGAGCAATCTATTTTCTATGAACTTTTTTGGTTCTACTTAATCAATGAAGATGGTATTTGCACTTTTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'117-141,'117-139,119-141
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGTCTTTTAGCCTCTGA
R:
GCCACAGTCTCCCTTATCCCA
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]