BtaEX0020542 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024632 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:57007395-57018917:+
Coord C1 exon
chr2:57007395-57007539
Coord A exon
chr2:57010384-57010482
Coord C2 exon
chr2:57011771-57018917
Length
99 bp
Sequences
Splice sites
3' ss Seq
AATTCTCTGTTTACACACAGGCC
3' ss Score
7.43
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GACAAAAACTATAAGAAGACAGCCTATTATTAATGGAGGAATAAATGTAGAAATCGGCAATCCATCTTATAATATGTATGAGGTCGACCATGATCACAATGATGGAGGTCTTTTAGATCCTGGCTTTATGGTAGATCCAGCAAAG
Seq A exon
GCCAGGTACATAGGGGGAGGGTCCAGTGTTTTCAAGCTTCCACACACAGCGCCGCCCATCTACCTAAACTCTGATTTGAAAGGACCACTAACTGCTGGG
Seq C2 exon
CCAACAAATTACTCCAATCCGGTATATGCGAAATTGTATATGGATGGGCAAAACTGTCGAAACTCCTTAGGAAGTGTCGATGAAAGGAAAGAACTGCTTCCAAAGAAAATAGAAATTGGAATCAGAGAAACGGTGGCATAATCGGAGATACCTTTTATATGCTGTACAAATGTATAAAATATAAGGATTACTTTTGTATGTTCCAACAGTATTCTACTTGTTTTGGCATCAGCATTACCTCTTCCTTTATCTTTTTTCTGGTCAATTGTTTTCTGAGTTTTCTGGGTTTTATTTTTTGCTGATGACTCTTGATTGACCATTTGTATGGTATTTTTATGAAAAAGAACTGCACTACAGTACAATTTACAACAATGCTGCTGATGACACACCTTTGAATTTGTTAAAATTAAAAACAACATATTCCTTTGTAGTGTGAATATAAGCAATCTATTTTATATGAACTTCTTTGGTTCTACTTAATCAACAAAGAGAATCTCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024632_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PD(10.8=16.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTCTTTTAGATCCTGGCT
R:
GCCACCGTTTCTCTGATTCCA
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development