MmuINT0070374 @ mm9
Intron Retention
Gene
ENSMUSG00000064263 | Gm1631
Description
predicted gene 1631 [Source:MGI Symbol;Acc:MGI:2686477]
Coordinates
chr2:71561347-71568490:+
Coord C1 exon
chr2:71561347-71561553
Coord A exon
chr2:71561554-71568406
Coord C2 exon
chr2:71568407-71568490
Length
6853 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TTCTTTTTCTCTGTTTACAGGAA
3' ss Score
11.9
Exon sequences
Seq C1 exon
CAGGTTCAAGCTCAAGCAGCAATCAGATCATGTAGAATGACCACAGCCAAATGCACAAGCCCATTTGAGAAGCAAGGGAATGTCTTGTGTGATCCCAGAATCCCAGGTCCCGGGAAGACAGAAATGTTGCTGAGACCCCGTGGCAGCTTGGGTTCAAGCAAGACAAAGCTGCAGCCAACAGGGCTGCCATCTTCTCACTCTCTAAAG
Seq A exon
GTGGGGACACAGCTCTGGTAGCTGTTCTTGTTTGTTCCTCTCCCCTTCTTCTCCCTCCTCTCTTCCTTCATTTCTTTTCTTCTTTCTTTTTCTTAGACAAGGTATGTGCTGGCTGACATAGAACTCACTATGTAATTCAGCCTGGCCTTCAATTTGAAATCCTCCTGCCTCAGGTTCCTAAGTATCAGGATGATGGACACATACCTCCGTGCTTGAGTCTTCTTCCCTTTGTTAAGGTTTCTGGGTTTACAAGTACTCTGAGTGACAATCCAACATTCTCAGCAGCGTCTTTGGCTCAGTTTTGGTCCCATGGGTTGTGGGTGAAATAGAACAGAGTCATGGTGTAAACACAGTGCTGGTTGCAGCTCCCGTGGGAAGAAATATAGTGGTCAGAGGTAGTTCTCAAAGACAGCAAATTGCTGCAGGATGCACAAATGTCCCAAATGAGGCTGCTGGTGTATGTAAGTTCTACATCTCTCTTCCTTTCCACCTTAATATCTGTAGTAACCATTTGTCAGATGGCTTCTCCTATCTAGCTTTGTACAGCAGCAGGTTATTTCACAAAGTGTCCCATGTCTTAGGAGAGCTGCAGAGGAGATGCAAGCAAGGTAATAGCATCTTCTCAAATCTCTGCCTCGTCAACATAAGACACAGCTATTTTCTATAACTCAGAGTTAATAGAATGTTAAGAGACTTGGGATGGACGGGATGTGACTCATCCCTAAGCAAAGATAAAACAGTATTGCAAGAGAGTCCTTTGGTGTTAGTCTGGGGAAAGCGAATAGATATGAGTAGTGAGGATTTCTTGAGGGTCTCTCGGTTTCCTGGGCTTCCAGAGACTCTACACATGGAGAAAGTAAATGCAGGGGAAGTTAAGAGACACTCGTGCGCTTTTTAAGAGCTCTTGGAGAGCTGATACACATTCAAGGTCCCATGCTGAAGCTCCCTGCCCTGGCTTCTGGCCTCTCTGTAGTTGTTGGTCCAGATAAGATTGTGTCATGTGGCACTTGAAAGTGACCCTTTGAGTCTGCTGACCCCAGGAAACTGTGTGACACTGCTAATTGAACAAAACCAGGAGGCTCCATTTTGAGAGGAGGCAAATTATTGAAATCTGTTAAACTTGGTTGTTTTCTATTTGATATTAGCAATGTATTCCTAAGGTTTCATGAAATTACTTATTATAACCAGTTAGAGAACAAGATTCTTGAAGAGGTAAGCTCCATACATCTATGAATAAATTGATAAAGGTATTAATGGCTGTGTGACTTCCTGGGGAGAGGCAAACTAACTTCTCTTTACCCTAGAAGAAATGCCAATGCCAGGCCAGAGAAACAGTTCTGCCCAGGTCTAGTTTGGAGAGTCAGGGGATTTACTGAGGTGACTTTACAAGACTACCGGTGAGAAGCCCACAGTGGGTAACCTGAAAGCACAAAAGGGGCACCCAGCATGGGTGCTGATGATAGGGTTAGGATGTGAACCCCAAATCAGAGCTTTATAGCCCCAGGGCAAGGAGCTGGGGTAGGCTGAGTCGGATGGCCCACCTCCACGGTCAACTGGACGATCCTAGATGTAGGAGGAGTAACAAGAGAGAGCCAACCTGAAATCTACCAGCTGCATGGAAATGGACATGAAAAACTTGGAATCCAATAGGGGCAGAGATCAGGTGCAACCCAAAAGGAAAATCAAAGTAAAAACCTCCCTGCAACTGACTCACACCTATTTGAGCTAGCTAGCCATTACACAGTAGGGCAGCCCCCCTGCGCCTGAAGGAGATCTAATCCACACCAGAGCAACCAGAAGCTGATAGACAGTAGATGCAAACTGTTCTCAGGCACCTTTTGACAGCCAAGTGCCTGCTTTCCTGCCATCAGCAGGAAGCAGACCCCTGGGCTGGTCTGATTAGGATTGTTCTTATCTCGCTCAGCTTTCTTCTCCTTATCCAGATTTGGAAACACTTCCCTGATACATCCCATTTCACACTTCATTTACTTGCACACACACACACACACACACACACACACACACACACACCCTGCCAATCAGGGCCAACCTGGCTGTATGTAGCCAAGTGTGTGAGGGCTAGAAAGAGAGCTCAATGGTTAAGTGTTAGGTCTCAGAGGCAGAACAAATGGCTGCTGTGCCATTTTAACATATCAAAGCAGACCTGGTCTCCAGGTTCTCCCAGCATCCCTCAGTCCCCACCTGTTACAGGGCCCTTCAGTCTGGCATACCCAGTCTCCTACCCTAAACTTCTTCAGCTCGGGGACAGAGATGGGCTGTTCTTCTCTTAGCTGCTCTTCCCTATATAACCCAGATATTTTGTCTAGACTGGCTCTTTTGGCCTCTTTGTGCCCTTTTGGTCTCCTGGCTAACTCCTGGCTCTCCCCTCTCATCTCTCCTCCCAGGACTCAGTCTGATGGTTGCGTTCACTCTGGACTCTCCCAGATGTGTCTACCTCTGCCTGTGCTCTTCCTTGCAGCCATAGTGAAAGCCTCAGCCCTTAGGAACAGTCTGTCTTCTTCTTTTTTAAATTTCTTTAAACATTTATTTATTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGTGTCAGATCTCATTATGGGTGGTTGTGAGCCACCATGTGGGTGCTGGGATTTGAATTCAGGACCTCCGGAAGAGCAGTCGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCATCTGTCTTCTTTTTATGTATCTTTTTCATTCAAGGAGCAATGGCTGCTCTTTCTGAGGACCTGGGTTTGAGTATCAGCACCCATGTGATGGATCACAGCCATCTGTAACGACAGTTTGAGAACTGACATTCCTGGGACCAGGTGAAGGGACTCTAGACAGCTGGAGCACAGCAAACATGGCCCTGGCAAGTCTTGCCCTTCTCCCATTCTTTCTGCCTTGGTAGAAAATGTTAGATTATATTTCTAAAGCTAGCCCCCAAGGTCCATTCCCTTATTTGGCCACTTTCTCCCCTGAGGCTAACAACCATGGTTTAGCTATCAAAGTATTGAAGTACAGCAATCAAAAGTCCCTTTTTGGCTCACCTAATAAACATGCCCAATTAAAATTAAACTCTTCATCCTAACACAGGATTTCACCTTTTACCTTTATTTATTTATTTATTTATTCTTACATTTATTTAGGTTTTCTTTTTCTTCCATTCTTTCATTTCTCTTTCTCTCTCTCTTTTCTTTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGACAGAGTCTCTCTGTGTACCCCTGGCTATCCTAGAACTTACTCTGTAGCCCAGGCTGGCCTCAAACTCAGAGATCTGCCTGCCTCTGCCTCTTAAGTGAGGGAATTAAAGGCCTGTGCCACCATGCTTGCCTCCTAAATCCAGCCTTTTGCCTGTGGGCTATATCTGTGTCCTTTGTATCCAGAGTTGTCCCTCCAGGACAATTATCTCTTCCCAGACAAATATCCCTTCCCCCTCTCCCTTATCGTGGCTTTGAATTCTAATTTGGACCTTCTAGGCTTATCAAAGGGACTAAGGCTTTTCCGTTCTAGGGAAGGAAAATTTAGTATCAAGTTTGACCTTGTTGATAACATTCAGACAGACTTAGGTCAGATTCATCCTTGAAATGTAACTATTCCTAGCACAGGCTGACAGCACACCCTGGCTGATAAGGCAGGTGTCTGTCCTGTCCAGGATGTGGCTCCTGCACATCTGACCCCCGAGCACACTGTCTTAGAAATCCTGACATTTCTCGCCAACCTAAATGACCTGAAGGGTGTCTGCTGAACCTGGAGACAGAACAGAAAGACCTGTTCTGACCGGTCAGTGGCTTGCTGAAAAACCACAAATAGGCCTTCCTGACTGTGTGAGGTGACGGAGAATCACTGCTGGAATGTTGTCATCAGCCTTTGGTGTCTAATGCTCTCTCCATCTCCAGCCTGCCCAGTCCTGGACTGAGTCCATTGTACTGCACATCTCAAACTTGGCTCCATGGACAGAGCTAATATCACTATAGAGGTCAAGAGCCATTTAGGCTCTCTACCTTGACAGGAGACTGTAAGAGAACTAGTGTGATGGTTGGTATGAAGCGGGGAACTTGAAGGTGTTTTGTAGAGCACAAATGGCATTCAGACTTGTGCCCAGGCAGTGGGAATAGACAAGGCAAAGCAGGGGTGGAGATAGTGTTTGGTTAGCATGCAGTAGTCTGCCTGACTACTTCATCTTCTGTATCCCACCATTAGCATCTTGAGCAGCAGTGTTACAGGTATCTCATCTGATATATGTCCCCTCTGCTCCATTCCAAGCCTGAACATCTCATTACCTCCCATGGAATGGGAGTGACTATCAAAGAGAATGGCGGCTGGGGGTCTCTTCTGTTAAACTGGAAGTTACCTGAGTGTCCATGGTTGCATGTGGGAGACCATATGGGATACAGCACAGCTGCAGGAAACCGTGGGTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTGTGGGGGTGTTTCTCTGCATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCAGAGTGCTGGGATTAAAGGCATGTGCCAGCCACCACGCCCTTCGGAAACTGTGTTTTTAAGAATCTGATGATCCAGAAAGATACTCAAAATGTTAAGAAAAAGAAACGTTATTTACAGCACACAGTCTCATATTTGTCAAAACCTACACATAAGTCCGTGTATTTATATAAACATGCATATGGGCATTAGAAAGGTGACAGCAATTGGTTGTGTTGGGAAGTCCTCTGTCGTGTGGCTCTGTGGGTACTCATGAGGAACGTTTGGGGAAAGGAGACCAAAGGCAGGCTCTGCCGCGGTTACTGAAGGGCTTTCAAGGACAGAAGGGACACCTGCACATTCTAGCGACTTGAGTCCTGGTTACACCTGCCCGTCCCAGCCCCCACCCCTGGAGACTGAGAGTTGGTGAGGCAGGTACCATGAAGGGCAGAACTCAGAGGTGGCTCATAGAACAGAGTTCTGTCCAGCTGTTTGCTCGGGCAGTGGGGAGAGAAAAGAAGATGCAGAAAGAAGGCTACTGGCTTGTTAGCTGTATGCTTCCAGGCTGGACCCTGGCCTAGCAGGTCCACATCAGCCATCAGAAGGACACCAGGCAGAGTGCTCTCAAAGCAAAATCTACCGTGCTGTCTCTCAAATTATCTGACCTGTTTCTTTAAGGCCAATGGCAGAGCCTGATTGGCATGAGCCCCAGCTAAGAGAACAGCTGTAGAATATGTGTGAATCCCAGATCATTAGAGGAAGACCATAGAACAAGGTGACTACAAACCCCAGGCCAGTTGACTTCCCGTGGAATGTGTGCCAACAGGCTCCAGCCAACCTTATTTAACTCTCGAAGGACAGGGTGACGTCAGCTGACATCTGGGCAGCACTTGTTATCAGGGAGTTGCCAGGAAGACCCAGGAGGCACACTTACTGCATCTGTGGAGATCCAGGAGTTGAAAGGAATGGCCGGTGCATAATTACAAACCAGAAAGTGTCAGCAGGCTCAGATGCTGCCCTGCGTCTCATAGGAAAAAACAGTACAGTCAGTTGAAGGACAAGGCTGAAGAGCAGGCAGCCTGGGGCCACCCCTTCAGGCTCCACCATAGCTGTGCCTTCCTACGGACTGAGAGATGCTCTACTCCATATTCCATATGCTTTGCTGTGCAGACTCATGTCCATCCAGAGTAAGCTTGAGTTTGCAGGTAGGAAAGCACCCTGGGTGGCTGGGTGGCTGGGTGGCTGGTGGGGCATGGGGACTTTGCAGCTCATAGGGAGCTTGCCAGGACTTCCTGCGCAAATGAAGGCATGTGATTCCATCTGTCCTGAGCCTAGAAAAGAGACTCTGGAGTGATACGTCAAGTTATTTGGATTTAAATATTATAATCATTTAGAGAGTAAGATTTTGGAAGAGGCAAGCTTGATACATTGCTAAAGGTATCGATGGGTGCGTGAGTCCCTAAGAATCCCTGGGAAGTTTCACATTGTCCAACGCTGTGTTTTCACCCTGGTCCAGCAGCTCTTCTGCTAGAGATAAAACAGAATCCCAATGGGAAAGATCCCCGAAGCCCCACTTCCTGCAGCAGCCCAGAACTGAGCTGAGCAGAGCCAGGCAAGAGTAACTGTGACCGTGATGAAGAGGAGGAGAGGCCACAAAAACACGAGGCCAGTGTGGAGCTGAACAGCCCTTGTGTCCTAGCTCCGACAGTATCATAGGGTGTAGGTTCCAATGTTAATGTGTTGGATGTAAAGCCTCGCTAGCCCTTACCTCAAAGGAATAGGGATGGGGGCAGGGGGAGGGAGAGCTACACAGGGGTGACCATGGCCTGAAAACACGGGTTCAGGTTATCTCAAATGACATATTCCACCGTGGAAGTGGTTACAGACACTTCATTAGTTACAGAACGAAAAAAAGGGTCATAAAGCATTTGTCCAACCTGAAATACATTTGTGGAGACCACAAGTAAGCACTGATTTAGGTTTCAGACGTTATCTGATGACAGGCTTGGCCTTTGGATTGGTGGAAGCTCTGCTAAGAACAGGGTGTTAGGTCAGATGCACAGGCCTGGGCAATGGACGGCTTTCAAAGGAACTAAAAATAGCTCTGCGGAATTGGGTCTGCAACATTCTAACTCTTTATGGTCTCAGTCAGTCACTTGCCCTTGAAGAATCTTTAACACAGGTGTGTGGCTTTTCTTTTTCTCTGTTTACAG
Seq C2 exon
GAATGTGAGAGGGTGACCACCCTACAACCCAGGGAAATGGGTTCTTGTTCTAGCCTGGTGTTGGAGAATCACTCTCTGCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064263-Gm1631:NM_201366:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=NA C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: