MmuINT0070374 @ mm10
Intron Retention
Gene
ENSMUSG00000064263 | Platr26
Description
pluripotency associated transcript 26 [Source:MGI Symbol;Acc:MGI:2686477]
Coordinates
chr2:71723290-71730433:+
Coord C1 exon
chr2:71723290-71723496
Coord A exon
chr2:71723497-71730349
Coord C2 exon
chr2:71730350-71730433
Length
6853 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TTCTTTTTCTCTGTTTACAGGAA
3' ss Score
11.9
Exon sequences
Seq C1 exon
CAGGTTCAAGCTCAAGCAGCAATCAGATCATGTAGAATGACCACAGCCAAATGCACAAGCCCATTTGAGAAGCAAGGGAATGTCTTGTGTGATCCCAGAATCCCAGGTCCCGGGAAGACAGAAATGTTGCTGAGACCCCGTGGCAGCTTGGGTTCAAGCAAGACAAAGCTGCAGCCAACAGGGCTGCCATCTTCTCACTCTCTAAAG
Seq A exon
GTGGGGACACAGCTCTGGTAGCTGTTCTTGTTTGTTCCTCTCCCCTTCTTCTCCCTCCTCTCTTCCTTCATTTCTTTTCTTCTTTCTTTTTCTTAGACAAGGTATGTGCTGGCTGACATAGAACTCACTATGTAATTCAGCCTGGCCTTCAATTTGAAATCCTCCTGCCTCAGGTTCCTAAGTATCAGGATGATGGACACATACCTCCGTGCTTGAGTCTTCTTCCCTTTGTTAAGGTTTCTGGGTTTACAAGTACTCTGAGTGACAATCCAACATTCTCAGCAGCGTCTTTGGCTCAGTTTTGGTCCCATGGGTTGTGGGTGAAATAGAACAGAGTCATGGTGTAAACACAGTGCTGGTTGCAGCTCCCGTGGGAAGAAATATAGTGGTCAGAGGTAGTTCTCAAAGACAGCAAATTGCTGCAGGATGCACAAATGTCCCAAATGAGGCTGCTGGTGTATGTAAGTTCTACATCTCTCTTCCTTTCCACCTTAATATCTGTAGTAACCATTTGTCAGATGGCTTCTCCTATCTAGCTTTGTACAGCAGCAGGTTATTTCACAAAGTGTCCCATGTCTTAGGAGAGCTGCAGAGGAGATGCAAGCAAGGTAATAGCATCTTCTCAAATCTCTGCCTCGTCAACATAAGACACAGCTATTTTCTATAACTCAGAGTTAATAGAATGTTAAGAGACTTGGGATGGACGGGATGTGACTCATCCCTAAGCAAAGATAAAACAGTATTGCAAGAGAGTCCTTTGGTGTTAGTCTGGGGAAAGCGAATAGATATGAGTAGTGAGGATTTCTTGAGGGTCTCTCGGTTTCCTGGGCTTCCAGAGACTCTACACATGGAGAAAGTAAATGCAGGGGAAGTTAAGAGACACTCGTGCGCTTTTTAAGAGCTCTTGGAGAGCTGATACACATTCAAGGTCCCATGCTGAAGCTCCCTGCCCTGGCTTCTGGCCTCTCTGTAGTTGTTGGTCCAGATAAGATTGTGTCATGTGGCACTTGAAAGTGACCCTTTGAGTCTGCTGACCCCAGGAAACTGTGTGACACTGCTAATTGAACAAAACCAGGAGGCTCCATTTTGAGAGGAGGCAAATTATTGAAATCTGTTAAACTTGGTTGTTTTCTATTTGATATTAGCAATGTATTCCTAAGGTTTCATGAAATTACTTATTATAACCAGTTAGAGAACAAGATTCTTGAAGAGGTAAGCTCCATACATCTATGAATAAATTGATAAAGGTATTAATGGCTGTGTGACTTCCTGGGGAGAGGCAAACTAACTTCTCTTTACCCTAGAAGAAATGCCAATGCCAGGCCAGAGAAACAGTTCTGCCCAGGTCTAGTTTGGAGAGTCAGGGGATTTACTGAGGTGACTTTACAAGACTACCGGTGAGAAGCCCACAGTGGGTAACCTGAAAGCACAAAAGGGGCACCCAGCATGGGTGCTGATGATAGGGTTAGGATGTGAACCCCAAATCAGAGCTTTATAGCCCCAGGGCAAGGAGCTGGGGTAGGCTGAGTCGGATGGCCCACCTCCACGGTCAACTGGACGATCCTAGATGTAGGAGGAGTAACAAGAGAGAGCCAACCTGAAATCTACCAGCTGCATGGAAATGGACATGAAAAACTTGGAATCCAATAGGGGCAGAGATCAGGTGCAACCCAAAAGGAAAATCAAAGTAAAAACCTCCCTGCAACTGACTCACACCTATTTGAGCTAGCTAGCCATTACACAGTAGGGCAGCCCCCCTGCGCCTGAAGGAGATCTAATCCACACCAGAGCAACCAGAAGCTGATAGACAGTAGATGCAAACTGTTCTCAGGCACCTTTTGACAGCCAAGTGCCTGCTTTCCTGCCATCAGCAGGAAGCAGACCCCTGGGCTGGTCTGATTAGGATTGTTCTTATCTCGCTCAGCTTTCTTCTCCTTATCCAGATTTGGAAACACTTCCCTGATACATCCCATTTCACACTTCATTTACTTGCACACACACACACACACACACACACACACACACACACACCCTGCCAATCAGGGCCAACCTGGCTGTATGTAGCCAAGTGTGTGAGGGCTAGAAAGAGAGCTCAATGGTTAAGTGTTAGGTCTCAGAGGCAGAACAAATGGCTGCTGTGCCATTTTAACATATCAAAGCAGACCTGGTCTCCAGGTTCTCCCAGCATCCCTCAGTCCCCACCTGTTACAGGGCCCTTCAGTCTGGCATACCCAGTCTCCTACCCTAAACTTCTTCAGCTCGGGGACAGAGATGGGCTGTTCTTCTCTTAGCTGCTCTTCCCTATATAACCCAGATATTTTGTCTAGACTGGCTCTTTTGGCCTCTTTGTGCCCTTTTGGTCTCCTGGCTAACTCCTGGCTCTCCCCTCTCATCTCTCCTCCCAGGACTCAGTCTGATGGTTGCGTTCACTCTGGACTCTCCCAGATGTGTCTACCTCTGCCTGTGCTCTTCCTTGCAGCCATAGTGAAAGCCTCAGCCCTTAGGAACAGTCTGTCTTCTTCTTTTTTAAATTTCTTTAAACATTTATTTATTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGTGTCAGATCTCATTATGGGTGGTTGTGAGCCACCATGTGGGTGCTGGGATTTGAATTCAGGACCTCCGGAAGAGCAGTCGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCATCTGTCTTCTTTTTATGTATCTTTTTCATTCAAGGAGCAATGGCTGCTCTTTCTGAGGACCTGGGTTTGAGTATCAGCACCCATGTGATGGATCACAGCCATCTGTAACGACAGTTTGAGAACTGACATTCCTGGGACCAGGTGAAGGGACTCTAGACAGCTGGAGCACAGCAAACATGGCCCTGGCAAGTCTTGCCCTTCTCCCATTCTTTCTGCCTTGGTAGAAAATGTTAGATTATATTTCTAAAGCTAGCCCCCAAGGTCCATTCCCTTATTTGGCCACTTTCTCCCCTGAGGCTAACAACCATGGTTTAGCTATCAAAGTATTGAAGTACAGCAATCAAAAGTCCCTTTTTGGCTCACCTAATAAACATGCCCAATTAAAATTAAACTCTTCATCCTAACACAGGATTTCACCTTTTACCTTTATTTATTTATTTATTTATTCTTACATTTATTTAGGTTTTCTTTTTCTTCCATTCTTTCATTTCTCTTTCTCTCTCTCTTTTCTTTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGACAGAGTCTCTCTGTGTACCCCTGGCTATCCTAGAACTTACTCTGTAGCCCAGGCTGGCCTCAAACTCAGAGATCTGCCTGCCTCTGCCTCTTAAGTGAGGGAATTAAAGGCCTGTGCCACCATGCTTGCCTCCTAAATCCAGCCTTTTGCCTGTGGGCTATATCTGTGTCCTTTGTATCCAGAGTTGTCCCTCCAGGACAATTATCTCTTCCCAGACAAATATCCCTTCCCCCTCTCCCTTATCGTGGCTTTGAATTCTAATTTGGACCTTCTAGGCTTATCAAAGGGACTAAGGCTTTTCCGTTCTAGGGAAGGAAAATTTAGTATCAAGTTTGACCTTGTTGATAACATTCAGACAGACTTAGGTCAGATTCATCCTTGAAATGTAACTATTCCTAGCACAGGCTGACAGCACACCCTGGCTGATAAGGCAGGTGTCTGTCCTGTCCAGGATGTGGCTCCTGCACATCTGACCCCCGAGCACACTGTCTTAGAAATCCTGACATTTCTCGCCAACCTAAATGACCTGAAGGGTGTCTGCTGAACCTGGAGACAGAACAGAAAGACCTGTTCTGACCGGTCAGTGGCTTGCTGAAAAACCACAAATAGGCCTTCCTGACTGTGTGAGGTGACGGAGAATCACTGCTGGAATGTTGTCATCAGCCTTTGGTGTCTAATGCTCTCTCCATCTCCAGCCTGCCCAGTCCTGGACTGAGTCCATTGTACTGCACATCTCAAACTTGGCTCCATGGACAGAGCTAATATCACTATAGAGGTCAAGAGCCATTTAGGCTCTCTACCTTGACAGGAGACTGTAAGAGAACTAGTGTGATGGTTGGTATGAAGCGGGGAACTTGAAGGTGTTTTGTAGAGCACAAATGGCATTCAGACTTGTGCCCAGGCAGTGGGAATAGACAAGGCAAAGCAGGGGTGGAGATAGTGTTTGGTTAGCATGCAGTAGTCTGCCTGACTACTTCATCTTCTGTATCCCACCATTAGCATCTTGAGCAGCAGTGTTACAGGTATCTCATCTGATATATGTCCCCTCTGCTCCATTCCAAGCCTGAACATCTCATTACCTCCCATGGAATGGGAGTGACTATCAAAGAGAATGGCGGCTGGGGGTCTCTTCTGTTAAACTGGAAGTTACCTGAGTGTCCATGGTTGCATGTGGGAGACCATATGGGATACAGCACAGCTGCAGGAAACCGTGGGTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTGTGGGGGTGTTTCTCTGCATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCAGAGTGCTGGGATTAAAGGCATGTGCCAGCCACCACGCCCTTCGGAAACTGTGTTTTTAAGAATCTGATGATCCAGAAAGATACTCAAAATGTTAAGAAAAAGAAACGTTATTTACAGCACACAGTCTCATATTTGTCAAAACCTACACATAAGTCCGTGTATTTATATAAACATGCATATGGGCATTAGAAAGGTGACAGCAATTGGTTGTGTTGGGAAGTCCTCTGTCGTGTGGCTCTGTGGGTACTCATGAGGAACGTTTGGGGAAAGGAGACCAAAGGCAGGCTCTGCCGCGGTTACTGAAGGGCTTTCAAGGACAGAAGGGACACCTGCACATTCTAGCGACTTGAGTCCTGGTTACACCTGCCCGTCCCAGCCCCCACCCCTGGAGACTGAGAGTTGGTGAGGCAGGTACCATGAAGGGCAGAACTCAGAGGTGGCTCATAGAACAGAGTTCTGTCCAGCTGTTTGCTCGGGCAGTGGGGAGAGAAAAGAAGATGCAGAAAGAAGGCTACTGGCTTGTTAGCTGTATGCTTCCAGGCTGGACCCTGGCCTAGCAGGTCCACATCAGCCATCAGAAGGACACCAGGCAGAGTGCTCTCAAAGCAAAATCTACCGTGCTGTCTCTCAAATTATCTGACCTGTTTCTTTAAGGCCAATGGCAGAGCCTGATTGGCATGAGCCCCAGCTAAGAGAACAGCTGTAGAATATGTGTGAATCCCAGATCATTAGAGGAAGACCATAGAACAAGGTGACTACAAACCCCAGGCCAGTTGACTTCCCGTGGAATGTGTGCCAACAGGCTCCAGCCAACCTTATTTAACTCTCGAAGGACAGGGTGACGTCAGCTGACATCTGGGCAGCACTTGTTATCAGGGAGTTGCCAGGAAGACCCAGGAGGCACACTTACTGCATCTGTGGAGATCCAGGAGTTGAAAGGAATGGCCGGTGCATAATTACAAACCAGAAAGTGTCAGCAGGCTCAGATGCTGCCCTGCGTCTCATAGGAAAAAACAGTACAGTCAGTTGAAGGACAAGGCTGAAGAGCAGGCAGCCTGGGGCCACCCCTTCAGGCTCCACCATAGCTGTGCCTTCCTACGGACTGAGAGATGCTCTACTCCATATTCCATATGCTTTGCTGTGCAGACTCATGTCCATCCAGAGTAAGCTTGAGTTTGCAGGTAGGAAAGCACCCTGGGTGGCTGGGTGGCTGGGTGGCTGGTGGGGCATGGGGACTTTGCAGCTCATAGGGAGCTTGCCAGGACTTCCTGCGCAAATGAAGGCATGTGATTCCATCTGTCCTGAGCCTAGAAAAGAGACTCTGGAGTGATACGTCAAGTTATTTGGATTTAAATATTATAATCATTTAGAGAGTAAGATTTTGGAAGAGGCAAGCTTGATACATTGCTAAAGGTATCGATGGGTGCGTGAGTCCCTAAGAATCCCTGGGAAGTTTCACATTGTCCAACGCTGTGTTTTCACCCTGGTCCAGCAGCTCTTCTGCTAGAGATAAAACAGAATCCCAATGGGAAAGATCCCCGAAGCCCCACTTCCTGCAGCAGCCCAGAACTGAGCTGAGCAGAGCCAGGCAAGAGTAACTGTGACCGTGATGAAGAGGAGGAGAGGCCACAAAAACACGAGGCCAGTGTGGAGCTGAACAGCCCTTGTGTCCTAGCTCCGACAGTATCATAGGGTGTAGGTTCCAATGTTAATGTGTTGGATGTAAAGCCTCGCTAGCCCTTACCTCAAAGGAATAGGGATGGGGGCAGGGGGAGGGAGAGCTACACAGGGGTGACCATGGCCTGAAAACACGGGTTCAGGTTATCTCAAATGACATATTCCACCGTGGAAGTGGTTACAGACACTTCATTAGTTACAGAACGAAAAAAAGGGTCATAAAGCATTTGTCCAACCTGAAATACATTTGTGGAGACCACAAGTAAGCACTGATTTAGGTTTCAGACGTTATCTGATGACAGGCTTGGCCTTTGGATTGGTGGAAGCTCTGCTAAGAACAGGGTGTTAGGTCAGATGCACAGGCCTGGGCAATGGACGGCTTTCAAAGGAACTAAAAATAGCTCTGCGGAATTGGGTCTGCAACATTCTAACTCTTTATGGTCTCAGTCAGTCACTTGCCCTTGAAGAATCTTTAACACAGGTGTGTGGCTTTTCTTTTTCTCTGTTTACAG
Seq C2 exon
GAATGTGAGAGGGTGACCACCCTACAACCCAGGGAAATGGGTTCTTGTTCTAGCCTGGTGTTGGAGAATCACTCTCTGCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064263:ENSMUST00000079720:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types