MmuEX0012669 @ mm9
Exon Skipping
Gene
ENSMUSG00000035403 | Crb2
Description
crumbs homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2679260]
Coordinates
chr2:37647574-37649387:+
Coord C1 exon
chr2:37647574-37647739
Coord A exon
chr2:37648143-37648262
Coord C2 exon
chr2:37648619-37649387
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCCTGCCTCTACTTCCCCAGTTT
3' ss Score
7.46
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CCCAATCCCTGTTTCAATGGTGGCACGTGCCACGTCACCTGGAATGACTTCTACTGCACCTGCTCCGAGAACTTCACGGGGCCCACCTGTGCCCAGCAGCGATGGTGCCCCAGGCAGCCATGCCTGCCTCCTGCCACCTGTGAGGAGGTTCCAGATGGCTTTGTGT
Seq A exon
TTTAGGGACTATGGATATGGGCCCCTACACCCCATTTGTTGGGTGCTAGGGATGGAACCCAAAGCCTCCTACAAGCTAGGCAGTCTACCAACCGAAGCTACTCTGCCAGCCTTACAGAAG
Seq C2 exon
GTGTGGCCGAGGCCACGTTCCGCGAGGGCCCTCCTGCTGTGTTCACAGGCCACAACGTGTCCTCATCGCTCAGCGGGCTCACCCTGGCCTTCCGCACGCGCGACTCCGAGGCTGGGCTACTGCGCGCCGTCTCCGCCGCAGGTGCCCACTCCAATATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAGGAGATGTGGCGGGTTCGGTGCTGCCCGCGCCCGGGCCGCGCGTGGCCGACGGCGCCTGGCATCGCGTGCGCCTAGCCCGGGAGTTCCCACAGGCCGCTGCCTCGCGCTGGCTGCTGTGGCTGGACGGCGCGGCGACACCCGTGGCCTTGCACGGCTTGGGCGGCGACCTGGGCTTTCTGCAGGGTCCGGGTGCAGTGCCTCTGCTACTGGCTGAGAACTTCACGGGCTGCCTGGGCCGCGTGGCACTTGGCGACTTCCCGTTACCCTTGGCGCCACCGCGGTCTGGCACGGTGTCTGGGGCGCGCGAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035403_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(90.3=50.0)
A:
NO
C2:
PF0221019=Laminin_G_2=WD(100=46.3),PF0000822=EGF=WD(100=12.1),PF126612=hEGF=WD(100=5.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCTACTGCACCTGCTCC
R:
CAGTAGCCCAGCCTCGGAG
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types