MmuEX0013832 @ mm9
Exon Skipping
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:70911178-70916221:+
Coord C1 exon
chr2:70911178-70911256
Coord A exon
chr2:70913504-70913593
Coord C2 exon
chr2:70916117-70916221
Length
90 bp
Sequences
Splice sites
3' ss Seq
AATGTATTCTTACCTTGTAGGCA
3' ss Score
8.7
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTACCTGAGCTGGGACACACCTCAGGAGGTCATCGCAGTGAAGTCGGCTCAGAACAAAGGCTCCGCAGCGGCTCGCCAG
Seq A exon
GCAGGCACTTCACCACCCGTTTTGTTGTACCTCGCAGTGTTCCGGGTTCTGCCCTTTTCACTTGTAGGGATTCTAGAGATCAACAAAAAG
Seq C2 exon
GTTTTTGAGAATGTCACAGATGCTACCTTGTCACATGGAATCCTGATTGTGATGTACAGCTCGGGACTAGTCAGACTCTACAGCTTCCAAGCCATCATCGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGAGCTGGGACACACC
R:
CTGTTCGATGATGGCTTGGAAG
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: