GgaEX6042334 @ galGal4
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr7:17530336-17532811:-
Coord C1 exon
chr7:17532733-17532811
Coord A exon
chr7:17532477-17532566
Coord C2 exon
chr7:17530336-17530443
Length
90 bp
Sequences
Splice sites
3' ss Seq
CAATGCTTTTTCTTTCCCAGGCA
3' ss Score
9.3
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTACCTAAGTTGGGATACTCCTCAAGAAGTAATGGTTGTGAAGTCAGCTCAGAATAAACTCCCTGCAGAAGCACGGCAG
Seq A exon
GCAGGTATCCAACAGTCTGTATTGTTCCATCTTGCTGTGTTCCAAGTTTTGCCTCTGTCATTTATTGGAATGCTAGAAATAAACAAAAAG
Seq C2 exon
ATATTTGGCAACAGTGTGACAGATGTTGCTATTTCTAATGGAATCCTGATTGTAATGTATAGCATGGGTTTGGTCAGGCTCTATAACTTCCAGGACATCTCTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558-'7-9,'7-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTAAGTTGGGATACTCCTCA
R:
CCTGGAAGTTATAGAGCCTGACC
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]