BtaEX0010747 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25060982-25063915:-
Coord C1 exon
chr2:25063837-25063915
Coord A exon
chr2:25062506-25062595
Coord C2 exon
chr2:25060982-25061086
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATTTTAGTCTTTCCTTTTAGGCA
3' ss Score
8.78
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTATTTGAGCTGGGACACTCCTCAAGAAGTCATTGCTGTCAAGTCAGCTCAGAACAAAAGTTCAACATTGGCCCGACAG
Seq A exon
GCAGGCATTCAACAGCCTGTTTTGCTGTATCTTGCAGTGTTCCATGTGCTACCTTTTTCACTCATAGGGATTCTGGAGATCAACAAAAAG
Seq C2 exon
ATTTTTGGGAACGTCACGGATGCCACCTTGTCTCATGGAATACTGATTGTGATGTACAGCTCGGGACTGGTCAGACTTTATAGCTTCCAAGCCATCACCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683-'11-11,'11-7,12-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCTGGGACACTCCTCAA
R:
TGCTTGGTGATGGCTTGGAAG
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development