RnoEX0026370 @ rn6
Exon Skipping
Gene
ENSRNOG00000009403 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:RGD Symbol;Acc:1565551]
Coordinates
chr3:57656152-57661807:+
Coord C1 exon
chr3:57656152-57656230
Coord A exon
chr3:57659115-57659204
Coord C2 exon
chr3:57661703-57661807
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTGTTATCTTGTAGGCA
3' ss Score
10.45
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTACCTGAGCTGGGACACTCCTCAAGAGGTCATTGCAGTGAAGTCGGCTCAGAACAAAGGGTCTGCAGCAGCTCGGCAG
Seq A exon
GCAGGCACTCAGCCTCCTGTTCTGTTGTACCTCGCCGTGTTCCGGGTCCTGCCCTTTTCCCTTGTAGGGATTCTAGAGATCAACAGAAAG
Seq C2 exon
GTTTTCGAGAACGTCACAGATGCTACCTTGTCACATGGAATCCTGATTGTGATGTACAGCTCAGGACTAGTCAGGCTGTACAGCTTCCAAGCCATCATCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009403-'7-7,'7-4,9-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGGACACTCCTCAAGA
R:
TGCTCGATGATGGCTTGGAAG
Band lengths:
177-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]