DreEX0025855 @ danRer10
Exon Skipping
Gene
ENSDARG00000074909 | dcaf17
Description
ddb1 and cul4 associated factor 17 [Source:ZFIN;Acc:ZDB-GENE-071008-1]
Coordinates
chr9:3537893-3539758:-
Coord C1 exon
chr9:3539677-3539758
Coord A exon
chr9:3538221-3538310
Coord C2 exon
chr9:3537893-3538000
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCATTCTCCGTCTCTCTCAGGCT
3' ss Score
9.64
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CAGATCGTTAGGTTGGGACTCTTCACAGGAGACATTTTACGTCAAATCCGTTCAATGCAAACAGACTGCTCTAGAACGACAG
Seq A exon
GCTGGTGTTGATAATAACATCCTCATGCGCGTGGCTGCATTTCAAGTGTTTCCACTGCAGCTTGTTGGAATGCTGGAGATAAATAAAAAG
Seq C2 exon
GTGTTTGGTAAGACTGCAGTGGATGTGCTGCTGTCACAGGGAGTGTTAGCTGTATCACACAGCTCAAAACTCGTCCGACTTTACAGTTTTGAGTACATTGTTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074909-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTGGGACTCTTCACAGGA
R:
ACTCAAAACTGTAAAGTCGGACGA
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]