MmuEX0039486 @ mm9
Exon Skipping
Gene
ENSMUSG00000052406 | Rexo4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2684957]
Coordinates
chr2:26813999-26816260:-
Coord C1 exon
chr2:26816123-26816260
Coord A exon
chr2:26815744-26815937
Coord C2 exon
chr2:26813999-26814087
Length
194 bp
Sequences
Splice sites
3' ss Seq
GGGGCCTTTGGTTCCCCTAGCTT
3' ss Score
4.92
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGAAGACATCTGGTTTGATGATGTGGATCCAGATGATATTGAGGATGCCATAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGGCTGGGGCAGAAGAAGAGGACCATCTCCCTGGAGAAGGAACAAGCCTTTGGCGG
Seq A exon
CTTGACAAAAGCCTTGGCCCTGGATTGTGAGATGGTAGGCGTGGGTCCCAAAGGGGAAGAGAGCATCGCAGCCCGTGTGTCGATCGTGAACCAGTATGGGAAGTGTGTTTATGACAAGTACGTCAAGCCAACTGAGCCAGTGACTGACTACAGGACAGCCGTCAGTGGGATCCGGCCTGAGAACCTGAAGCAGG
Seq C2 exon
GAGAAGAGTTTGAAGTTGTGAAGAAGGAAGTGGCAGAAATGTTGAAGGGCAGAATCCTGGTGGGGCATGCGCTACACAATGATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052406_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.404 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0092919=RNase_T=PU(39.7=90.9)
C2:
PF0092919=RNase_T=FE(31.5=100),PF0092919=RNase_T=PU(14.0=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGACATCTGGTTTGATGATG
R:
TTTAAATCATTGTGTAGCGCATGCC
Band lengths:
226-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types