BtaEX0030222 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019721 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr11:104362084-104363425:-
Coord C1 exon
chr11:104363288-104363425
Coord A exon
chr11:104362913-104363106
Coord C2 exon
chr11:104362084-104362172
Length
194 bp
Sequences
Splice sites
3' ss Seq
CTGGAGCCTCGGTCCCCCAGGCT
3' ss Score
4.73
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
AGACGACATCTGGTTTGACGATGTTGACCCAGCGGACATCGAAGCGGCCATTGGCCCGGAGGCAGCGAGCATAGCGAGGCAGCAGCTGGGCCAGAGCGAGAGCAGCAGCACGCTGGTGAAGGAGCGGCCCTTCGGCGG
Seq A exon
GCTGACTAAAGCCCTAGCCATGGACTGCGAGATGGTGGGCGTGGGCCCCGAGGGGGAGGAGAGCGTCGTGGCCCGCGTGTCCCTGGTGAACCAGCACGGGAGGTGCGTGTACGACAAGCACGTGAAGCCGACCCAGCCGGTGACTGACTACAGGACCGCGGTCAGCGGGGTCCGGCCTGCGGACCTGGCGCAGG
Seq C2 exon
GAGAAGAGTTTGAAGTTGTTCAGAGGGAAGTCGCGGAGCTGCTCAAGGGCCGGATTCTGGTCGGACACGCGCTGCACAACGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019721_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=0.258 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0092919=RNase_T=PU(39.7=90.9)
C2:
PF0092919=RNase_T=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGACATCTGGTTTGACGA
R:
CTTGAGGTCGTTGTGCAGCG
Band lengths:
227-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development