HsaEX0053151 @ hg19
Exon Skipping
Gene
ENSG00000148300 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:12820]
Coordinates
chr9:136276105-136278041:-
Coord C1 exon
chr9:136277898-136278041
Coord A exon
chr9:136277419-136277612
Coord C2 exon
chr9:136276105-136276193
Length
194 bp
Sequences
Splice sites
3' ss Seq
AGCCTTTGGTTACCCTTCAGCCT
3' ss Score
3.38
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGAAGACATCTGGTTTGACGACGTGGACCCAGCGGATATCGAAGCTGCCATAGGTCCAGAGGCGGCCAAGATAGCGAGGAAACAGTTGGGTCAGAGCGAGGGCAGCGTCAGCCTCAGCCTCGTGAAAGAGCAGGCCTTCGGCGG
Seq A exon
CCTGACAAGAGCCTTAGCCTTGGACTGTGAGATGGTGGGCGTGGGCCCTAAGGGGGAGGAGAGCATGGCCGCCCGTGTGTCCATCGTGAACCAGTATGGGAAGTGCGTTTATGACAAGTACGTCAAACCAACTGAGCCCGTGACGGACTATAGGACAGCGGTCAGTGGGATTCGGCCTGAGAACCTCAAGCAGG
Seq C2 exon
GAGAAGAGCTTGAAGTTGTTCAGAAGGAAGTGGCAGAGATGCTGAAGGGCAGAATTCTAGTGGGGCACGCTCTGCATAATGACCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148300_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=0.109 C2=0.150
Domain overlap (PFAM):
C1:
NO
A:
PF0092919=RNase_T=PU(39.7=90.9)
C2:
PF0092919=RNase_T=FE(25.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTGGTTTGACGACGTGG
R:
TTAGGTCATTATGCAGAGCGTG
Band lengths:
226-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)