RnoEX0075294 @ rn6
Exon Skipping
Gene
ENSRNOG00000027867 | Rexo4
Description
REX4 homolog, 3'-5' exonuclease [Source:RGD Symbol;Acc:1306220]
Coordinates
chr3:5505446-5507147:-
Coord C1 exon
chr3:5507010-5507147
Coord A exon
chr3:5506644-5506837
Coord C2 exon
chr3:5505446-5505534
Length
194 bp
Sequences
Splice sites
3' ss Seq
TGGGGCCTTTGGTTCTCTAGCTT
3' ss Score
6.48
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGAAGACATCTGGTTTGATGATGTGGATCCAGATGATATTGAGGCTGCTGTAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGACTGGGGCAGAGGACAAGTACCATCTCCCTGGTGAAGGAACAGGCCTTTGGCGG
Seq A exon
CTTGACAAAAGCCTTGGCCCTGGATTGTGAGATGGTGGGCGTGGGTCCCAAAGGGGAGGAGAGCATCGCAGCCCGTGTGTCCATCGTGAACCAGTATGGGAAGTGTGTTTATGACAAGTACGTCAAGCCAACTGAGCCAGTGACTGACTACAGGACAGCCGTCAGTGGGATCCGGCCTGAGAACCTGAAGCAGG
Seq C2 exon
GAGAAGAGTTTGAAGTTGTGAAGAAGGAAGTGGCAGCAATGTTGAAGGGCAGAATCCTGGTGGGGCACGCGCTCCGCAATGATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027867_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0092919=RNase_T=PU(39.7=90.9)
C2:
PF0092919=RNase_T=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTGGTTTGATGATGTGGATCC
R:
CGTGCCCCACCAGGATTCT
Band lengths:
202-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]