HsaEX0053151 @ hg38
Exon Skipping
Gene
ENSG00000148300 | REXO4
Description
REX4 homolog, 3'-5' exonuclease [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr9:133410985-133412921:-
Coord C1 exon
chr9:133412778-133412921
Coord A exon
chr9:133412299-133412492
Coord C2 exon
chr9:133410985-133411073
Length
194 bp
Sequences
Splice sites
3' ss Seq
AGCCTTTGGTTACCCTTCAGCCT
3' ss Score
3.38
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGAAGACATCTGGTTTGACGACGTGGACCCAGCGGATATCGAAGCTGCCATAGGTCCAGAGGCGGCCAAGATAGCGAGGAAACAGTTGGGTCAGAGCGAGGGCAGCGTCAGCCTCAGCCTCGTGAAAGAGCAGGCCTTCGGCGG
Seq A exon
CCTGACAAGAGCCTTAGCCTTGGACTGTGAGATGGTGGGCGTGGGCCCTAAGGGGGAGGAGAGCATGGCCGCCCGTGTGTCCATCGTGAACCAGTATGGGAAGTGCGTTTATGACAAGTACGTCAAACCAACCGAGCCCGTGACGGACTATAGGACAGCGGTCAGTGGGATTCGGCCTGAGAACCTCAAGCAGG
Seq C2 exon
GAGAAGAGCTTGAAGTTGTTCAGAAGGAAGTGGCAGAGATGCTGAAGGGCAGAATTCTAGTGGGGCACGCTCTGCATAATGACCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148300-'8-8,'8-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.592 A=0.050 C2=0.178
Domain overlap (PFAM):
C1:
NO
A:
PF0092919=RNase_T=PU(39.7=90.9)
C2:
PF0092919=RNase_T=FE(25.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTGGTTTGACGACGTGG
R:
TTAGGTCATTATGCAGAGCGTG
Band lengths:
226-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development