HsaEX0053150 @ hg38
Exon Skipping
Gene
ENSG00000148300 | REXO4
Description
REX4 homolog, 3'-5' exonuclease [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr9:133410985-133415011:-
Coord C1 exon
chr9:133414665-133415011
Coord A exon
chr9:133412778-133412921
Coord C2 exon
chr9:133410985-133411073
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGTTATCTTTGCCTTTTAGGGA
3' ss Score
11.2
5' ss Seq
CGGGTACGC
5' ss Score
8.33
Exon sequences
Seq C1 exon
TGGCTGCTGAAACAAAAATCTCAGGCCCCAGAAAAGCCTCTTGTCATCTCTCAGATGGGTTCCAAAAAGAAGCCCAAAATTATCCAGCAAAACAAAAAAGAGACCTCGCCTCAAGTGAAGGGAGAGGAGATGCCGGCAGGAAAAGACCAGGAGGCCAGCAGGGGCTCTGTTCCTTCAGGTTCCAAGATGGACAGGAGGGCGCCAGTACCTCGCACCAAGGCCAGTGGAACAGAGCACAATAAGAAAGGAACCAAGGAAAGGACAAATGGTGATATTGTTCCAGAACGAGGGGACATCGAGCATAAGAAGCGGAAAGCTAAGGAGGCAGCCCCAGCCCCACCCACCGA
Seq A exon
GGAAGACATCTGGTTTGACGACGTGGACCCAGCGGATATCGAAGCTGCCATAGGTCCAGAGGCGGCCAAGATAGCGAGGAAACAGTTGGGTCAGAGCGAGGGCAGCGTCAGCCTCAGCCTCGTGAAAGAGCAGGCCTTCGGCGG
Seq C2 exon
GAGAAGAGCTTGAAGTTGTTCAGAAGGAAGTGGCAGAGATGCTGAAGGGCAGAATTCTAGTGGGGCACGCTCTGCATAATGACCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148300_MULTIEX1-3/6=2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=0.592 C2=0.178
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(20.2=40.4)
A:
NO
C2:
PF0092919=RNase_T=FE(25.4=100)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGTTCCTTCAGGTTCC
R:
GTGCCCCACTAGAATTCTGCC
Band lengths:
253-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development