HsaEX0053150 @ hg19
Exon Skipping
Gene
ENSG00000148300 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:12820]
Coordinates
chr9:136276105-136280131:-
Coord C1 exon
chr9:136279785-136280131
Coord A exon
chr9:136277898-136278041
Coord C2 exon
chr9:136276105-136276193
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGTTATCTTTGCCTTTTAGGGA
3' ss Score
11.2
5' ss Seq
CGGGTACGC
5' ss Score
8.33
Exon sequences
Seq C1 exon
TGGCTGCTGAAACAAAAATCTCAGGCCCCAGAAAAGCCTCTTGTCATCTCTCAGATGGGTTCCAAAAAGAAGCCCAAAATTATCCAGCAAAACAAAAAAGAGACCTCGCCTCAAGTGAAGGGAGAGGAGATGCCGGCAGGAAAAGACCAGGAGGCCAGCAGGGGCTCTGTTCCTTCAGGTTCCAAGATGGACAGGAGGGCGCCAGTACCTCGCACCAAGGCCAGTGGAACAGAGCACAATAAGAAAGGAACCAAGGAAAGGACAAATGGTGATATTGTTCCAGAACGAGGGGACATCGAGCATAAGAAGCGGAAAGCTAAGGAGGCAGCCCCAGCCCCACCCACCGA
Seq A exon
GGAAGACATCTGGTTTGACGACGTGGACCCAGCGGATATCGAAGCTGCCATAGGTCCAGAGGCGGCCAAGATAGCGAGGAAACAGTTGGGTCAGAGCGAGGGCAGCGTCAGCCTCAGCCTCGTGAAAGAGCAGGCCTTCGGCGG
Seq C2 exon
GAGAAGAGCTTGAAGTTGTTCAGAAGGAAGTGGCAGAGATGCTGAAGGGCAGAATTCTAGTGGGGCACGCTCTGCATAATGACCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148300_MULTIEX1-2/3=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=0.585 C2=0.150
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(20.2=40.4)
A:
NO
C2:
PF0092919=RNase_T=FE(25.4=100)
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGTTCCTTCAGGTTCC
R:
GTGCCCCACTAGAATTCTGCC
Band lengths:
253-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)