BtaEX6047303 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019721 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr11:104362913-104365467:-
Coord C1 exon
chr11:104365133-104365467
Coord A exon
chr11:104363288-104363425
Coord C2 exon
chr11:104362913-104363106
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCCTCTGTCTCTTAGAGA
3' ss Score
8.75
5' ss Seq
CGGGTACGC
5' ss Score
8.33
Exon sequences
Seq C1 exon
CTGCTGAAACAAAGATCACGGACTCCACAAGAGCCTCCACTTCTGTCTCAAACGGATTCCAAAAAGCAGCCCCAGCGCGTCCAACAAAATAGAAACTCCATCTCAGATAAAGCAAAGACAGATGCGATGGGGACGGAAAACACAGACCCCGAGGTCACAGGGGCCTCCGGGCCCTCGGGATCGCTGATGAGCAGGAAGATACAGGCGCAGCCCAAGGAGAAAGGGGCCCAGAAAAGGACCAATGGAGACATTTCCCCGCAACAAGGCGACATCAAACATAAGAAGCGAAAAGCGAGGGAGCCGACCGCCCCCTCGCCTCCAGCCCCGCCCACCAA
Seq A exon
AGACGACATCTGGTTTGACGATGTTGACCCAGCGGACATCGAAGCGGCCATTGGCCCGGAGGCAGCGAGCATAGCGAGGCAGCAGCTGGGCCAGAGCGAGAGCAGCAGCACGCTGGTGAAGGAGCGGCCCTTCGGCGG
Seq C2 exon
GCTGACTAAAGCCCTAGCCATGGACTGCGAGATGGTGGGCGTGGGCCCCGAGGGGGAGGAGAGCGTCGTGGCCCGCGTGTCCCTGGTGAACCAGCACGGGAGGTGCGTGTACGACAAGCACGTGAAGCCGACCCAGCCGGTGACTGACTACAGGACCGCGGTCAGCGGGGTCCGGCCTGCGGACCTGGCGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019721-'3-5,'3-4,10-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.915 C2=0.258
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0092919=RNase_T=PU(39.7=90.9)
Main Skipping Isoform:
ENSBTAT00000026283fB5871
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGGGGCCCAGAAAAGG
R:
TTCACGTGCTTGTCGTACACG
Band lengths:
245-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]