GgaEX1048978 @ galGal4
Exon Skipping
Gene
ENSGALG00000003166 | REXO4
Description
REX4 homolog, 3'-5' exonuclease [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr17:6904505-6905547:-
Coord C1 exon
chr17:6905340-6905547
Coord A exon
chr17:6904901-6905056
Coord C2 exon
chr17:6904505-6904698
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATTAAATTTATACTTACCAGGGC
3' ss Score
4.66
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATAAGAGGGCCAAGAGTTGTGCTGATGGCAGCACTCCTATGGCTGGGCCCAAACCCAGGAAGGCTGAAGAGGACAAGAATTGGAATGGCACCAAAAGCGACGGGAAGAGCTGTAAAGAAAAAAGGAAAAATGGCAATATTGAAAAGGAGAAGAGCGACGTGAAACATAAGAAGAGGAAAGCTGAAGCTGCAGTGCAGCAGCCCAAAGA
Seq A exon
GGCTGACATCTGGTTTGATGACGTTGATCCAAAAGACATCGAAGCAGCAATAGGACCTGAAGCAGCAGAAGTTGCTAGAAGGAAACTGGGACTTGAAGCAGGCCAATCCAAACAGTCTGTGGAGCAGGTGCTGGTTAAAGAGAAGTCTTCTGGAGG
Seq C2 exon
TCTTACAAGAGCTGTAGCTATGGACTGTGAGATGGTGGGAGTGGGACCCAGCGGCGAAGACAGCATTGTGGCCCGTGTGTCCATCGTGAACCTCTTTGGAAAGTGCATTTATGACAAGTATGTCAAGCCTACAGAAGAGGTGACGGATTACAGAACAGCTGTTAGTGGCATACGACCTGAGCATCTAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003166_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.585 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0092919=RNase_T=PU(39.7=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAACCCAGGAAGGCTGAAG
R:
GAGGTTCACGATGGACACACG
Band lengths:
254-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]