RnoEX6016046 @ rn6
Exon Skipping
Gene
ENSRNOG00000027867 | Rexo4
Description
REX4 homolog, 3'-5' exonuclease [Source:RGD Symbol;Acc:1306220]
Coordinates
chr3:5506644-5509097:-
Coord C1 exon
chr3:5508757-5509097
Coord A exon
chr3:5507010-5507147
Coord C2 exon
chr3:5506644-5506837
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGTCATCTTTGTCTCATAGGGA
3' ss Score
9.79
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
CTGCTGAAACGAAAGTCAGAGGCCCCAGAAAAACCTCGTATCTCTCAACTGGATGACAAAATACATCACCAAATAATCCAGAAGAACAGAAAAAAAACCTCAGATAAATCAAAGGGAGACAAGAGGACAGAAGACGACAAGCCCACTAGGGATTCTGTTACATCTGCACCTAAGAAGGTCAGGAAGACACCAGTACCTCCCACAAATGCCTCTGGAACAGAGCAGAAGAAAGGAGCCGAGAAGAGGACACGCAGTGACCTCTCTTCTCACCAAGGGGACATCAAGCATAAGGGGAAAGCTAAGGAGGCAGCTGTCATCCTGAGCCAGCCCACGCCCACTGA
Seq A exon
GGAAGACATCTGGTTTGATGATGTGGATCCAGATGATATTGAGGCTGCTGTAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGACTGGGGCAGAGGACAAGTACCATCTCCCTGGTGAAGGAACAGGCCTTTGGCGG
Seq C2 exon
CTTGACAAAAGCCTTGGCCCTGGATTGTGAGATGGTGGGCGTGGGTCCCAAAGGGGAGGAGAGCATCGCAGCCCGTGTGTCCATCGTGAACCAGTATGGGAAGTGTGTTTATGACAAGTACGTCAAGCCAACTGAGCCAGTGACTGACTACAGGACAGCCGTCAGTGGGATCCGGCCTGAGAACCTGAAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027867-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=0.468 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0092919=RNase_T=PU(39.7=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGAAGACGACAAGCCCAC
R:
CACCATCTCACAATCCAGGGC
Band lengths:
253-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]