DreEX6083031 @ danRer10
Exon Skipping
Gene
ENSDARG00000088619 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr21:5826280-5826992:+
Coord C1 exon
chr21:5826280-5826317
Coord A exon
chr21:5826565-5826717
Coord C2 exon
chr21:5826799-5826992
Length
153 bp
Sequences
Splice sites
3' ss Seq
AACCCCCTGTTTTCCCTCAGGCC
3' ss Score
10.27
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
AGGAACAAGTTTAATGACCCCTGGTCTAAAGTCAAGAA
Seq A exon
GCCGGACCTCTGGTTTGACGACGTGGACCCCGATGACATCGAGTCCGCTTTAGGGACAGAAGCTGCGGACATCATGCGGAAACGCTGCGGATTAGCGAAGTGCGATCCAAAAAACACAGAGAAGATGCTGGTGAAAGAGCATGCGTTTGAGGG
Seq C2 exon
AGTGACTCGTGCGGTTGCGATGGACTGCGAGATGGTGGGTGTTGGATATAAGGGAGAGGACAGTATTTTAGCCCGAGTCTCCCTCGTCAACCACTTCGGGAAATGTATCTATGACAAATACGTCAAACCCACAGAGAAGGTTACGGACTACCGAACGGCGGTTAGCGGCATCAGACCGGACGACATCAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088619-'2-4,'2-3,4-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.308 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0092919=RNase_T=PU(39.7=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAAGTTTAATGACCCCTGGT
R:
TCTTGATGTCGTCCGGTCTGA
Band lengths:
228-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]