GgaEX7009806 @ galGal4
Exon Skipping
Gene
ENSGALG00000003166 | REXO4
Description
REX4 homolog, 3'-5' exonuclease [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr17:6903999-6905056:-
Coord C1 exon
chr17:6904901-6905056
Coord A exon
chr17:6904505-6904698
Coord C2 exon
chr17:6903999-6904087
Length
194 bp
Sequences
Splice sites
3' ss Seq
TGAGTTGTCTTTCTTTTCAGTCT
3' ss Score
9.11
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGCTGACATCTGGTTTGATGACGTTGATCCAAAAGACATCGAAGCAGCAATAGGACCTGAAGCAGCAGAAGTTGCTAGAAGGAAACTGGGACTTGAAGCAGGCCAATCCAAACAGTCTGTGGAGCAGGTGCTGGTTAAAGAGAAGTCTTCTGGAGG
Seq A exon
TCTTACAAGAGCTGTAGCTATGGACTGTGAGATGGTGGGAGTGGGACCCAGCGGCGAAGACAGCATTGTGGCCCGTGTGTCCATCGTGAACCTCTTTGGAAAGTGCATTTATGACAAGTATGTCAAGCCTACAGAAGAGGTGACGGATTACAGAACAGCTGTTAGTGGCATACGACCTGAGCATCTAAAGACAG
Seq C2 exon
GTGAAGACTTTAAAACAGTTCAGAAGGAAGTCGCTGATATCTTGAATGGAAGGATTTTAGTTGGGCATGCATTACACAATGACCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003166-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0092919=RNase_T=PU(39.7=90.9)
C2:
PF0092919=RNase_T=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGACATCTGGTTTGATGAC
R:
TAGGTCATTGTGTAATGCATGCCC
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]