Special

MmuEX0010876 @ mm9

Exon Skipping

Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:34978180-34981615:+
Coord C1 exon
chr2:34978180-34978373
Coord A exon
chr2:34979714-34979747
Coord C2 exon
chr2:34981496-34981615
Length
34 bp
Sequences
Splice sites
3' ss Seq
CATGTCTTGGTTTCTTACAGGTC
3' ss Score
11.67
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
AGGAGATAGAAAGACTGGAAAAAGACCTGGAGAAGAAGACAGTGGAAACAGAAGAGCTTAAGAACAAGCAAACAAAGTTTCTCGAGGAAATAAAGAATCAGGATAAACTAAACAAGTCATTAAAAGAAGAAGCCATGTTACAAAAACAGAGCTGTGAGGAGCTAGAAAGTGACCTCAGCACAAAGAAGGAGTTG
Seq A exon
GTCATTTTCCACTGAGTCTTTATTCTTCTCTAAG
Seq C2 exon
CTAAAACAGAAAACAGTGGAACTAACACGGGCATGTCAGAAGCAGTATGAGCTGGAGCAGGAACTGGCCTTTTATAAAATTGATGCCAAGTTTGAGCCATTAAATTATTATCCATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.046 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF145801=LRR_9=PD(6.1=15.4)

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000028237f5032A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000028237





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000028235, ENSMUSP00000028237f5031A, ENSMUSP00000118731
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr9:123872815-123872849 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr8:112435724-112435780 
ALTERNATIVE
BtaEX0009468
(CNTRL)
Chicken
(galGal4)
chr17:8350613-8350668 
ALTERNATIVE
GgaEX1016169
(CNTRL)
Chicken
(galGal3)
chr17:9054374-9054407 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CAAAAACAGAGCTGTGAGGAGC

				
R: 
TAAAAGGCCAGTTCCTGCTCC

				
Band lengths: 
128-162

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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