GgaEX1016169 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8349606-8351609:+
Coord C1 exon
chr17:8349606-8349799
Coord A exon
chr17:8350613-8350668
Coord C2 exon
chr17:8351490-8351609
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCTCTCTCCCTTTAGCTG
3' ss Score
11.62
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
Exon sequences
Seq C1 exon
AAGAGATAGAAAAATTAGAAAGAGAGTTAGAGAATGCAATAAAGGAGATGGAGAACCTTAAACTTAACCAGTCTAAAGTGCTTGAGCAACTTCACCATCAAGATGAGGTCAACAAATCATTAAAAGAAAAAACTTTGCAGCAGAAGCAAAGCTGTGAAGATCTACAAAGGGATGTGGATACCAAAAATGAACTG
Seq A exon
CTGGTGTATTGGTTTGTCACAGTTCCTTTCCGCAGAGCCTTTATTCCTCACTGAAG
Seq C2 exon
CTAAAGCAGAAAACAATGGAGCTGACACGAGCTTGCCAGAAGCAGTATGAGTTGGAGCAGGAACTGGCATTTTATAAGATTGATGCAAAATTTGAGCCATTAAGTTATTTTCCATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PD(18.8=55.4)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000002299fB6299
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCAGAAGCAAAGCTGT
R:
AAAATGCCAGTTCCTGCTCCA
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]