RnoEX0022611 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14315112-14318416:+
Coord C1 exon
chr3:14315112-14315305
Coord A exon
chr3:14316575-14316630
Coord C2 exon
chr3:14318297-14318416
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCTTTCTTCTCTTAGCCC
3' ss Score
8.56
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
AGGAGATAGAAAGGCTGGAAAAAGACCTGGAAAAGAAGACAGTGGAAACAGAAGAGCTTAAGAACAAACAAACAAAGTTTCTTGAGGAAATAAAACATCAGGATAAACTAAACAAGTCATTGAAAGAAGAAGCCATGTTACAAAAACAGAGCTGTGAGGAGCTAGAAAGTGACCTCAACACAAAAAAGGAGCTG
Seq A exon
CCCACATCTTGGTTTCCTGCAGGTCATTTCCTGCTGAGTCTTTATTCCTCTTTAAG
Seq C2 exon
CTAAAACAGAAAACAGTGGAACTGACGCGGGCATGTCAGAAGCAGTATGAGCTGGAGCAGGAACTGGCCTTTTACAAAATTGATGCCAAGTTTGAGCCACTAAATTATTATCCGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PD(6.2=15.4)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000092745fB3341
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAGGAGCTAGAAAGTGAC
R:
AGTGGCTCAAACTTGGCATCA
Band lengths:
145-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]