RnoEX6016591 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14315112-14319757:+
Coord C1 exon
chr3:14315112-14315305
Coord A exon
chr3:14318297-14318416
Coord C2 exon
chr3:14319535-14319757
Length
120 bp
Sequences
Splice sites
3' ss Seq
CATCTCACATTGGCCAATAGCTA
3' ss Score
2.52
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGGAGATAGAAAGGCTGGAAAAAGACCTGGAAAAGAAGACAGTGGAAACAGAAGAGCTTAAGAACAAACAAACAAAGTTTCTTGAGGAAATAAAACATCAGGATAAACTAAACAAGTCATTGAAAGAAGAAGCCATGTTACAAAAACAGAGCTGTGAGGAGCTAGAAAGTGACCTCAACACAAAAAAGGAGCTG
Seq A exon
CTAAAACAGAAAACAGTGGAACTGACGCGGGCATGTCAGAAGCAGTATGAGCTGGAGCAGGAACTGGCCTTTTACAAAATTGATGCCAAGTTTGAGCCACTAAATTATTATCCGTCAGAG
Seq C2 exon
TATGCTGAAATGGACAAATCCCCAGATGAAAGCCCTTACATTGGCAAATCCAGATACAAGAGAAATATGTTTGCCACCGAGACTTACATTGTCAGCGACGCCCAGGCAGTTCAGGTCAGGAAGATGGTGCCAGACGGAGGACAGCTCAGACATGAGCACGCACCGAGAGCCCAAGCACCACCTGATGTGCAGTTGGAAGACACAGGAAAACAAATAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-'8-15,'8-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=0.075 C2=0.680
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PD(6.2=15.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAGGAGCTAGAAAGTGAC
R:
CCTGTGTCTTCCAACTGCACA
Band lengths:
250-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]