DreEX0002921 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62753141-62758413:-
Coord C1 exon
chr5:62758220-62758413
Coord A exon
chr5:62755147-62755266
Coord C2 exon
chr5:62753141-62753330
Length
120 bp
Sequences
Splice sites
3' ss Seq
AACTTTTTATCATTATACAGCTG
3' ss Score
6.8
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
AGGAAGTGGAGCGTTTGGAGCAAGAGCTGGAGTTGAGAGCCGAGGAGATAGATCGGCTTCAGAGAGAGAGAACCATAGCACTGGAACAACTGGAACAGCAGGAAACAGTCAACCAAAACCTGAGGCAGCAGAATCAGGATCAACAGCACAGCCATGAGGAGCTCAAGAGAGAACTGGACACCAAGTCTGAACTG
Seq A exon
CTGAAGCAGAAAACTGTGGAATTGACCCAGGCCTGTCAGAAACACTATGAGCTCGAGCAGGAGTTGGCCTTTCACAAAATAGATGTCAAGTTTGAACCTCTTCCTTTTTATCCAGACCCT
Seq C2 exon
GAGGTGGAGGTAGACAACCTAATAAGTGAGAGTCCGTACATTGGAAAGTCTCGTCAGAAAAGAAACATCAAATTCCCATCAGAGACTGAGAATACTGGCACACAAGGCCAGCAGAAGCATCCGCCAGCCTCAGACCTGACAGAGACCGATAGCCCAGGAGATTACATGTCCAGACATGCCCAGCTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=0.125 C2=0.969
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PD(5.8=13.8)
A:
NO
C2:
PF101864=Atg14=PU(30.7=71.9),PF041569=IncA=PU(12.5=21.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCAAAACCTGAGGCAGC
R:
TGGGCTATCGGTCTCTGTCAG
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]