HsaEX0014673 @ hg38
Exon Skipping
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121107802-121113724:+
Coord C1 exon
chr9:121107802-121107995
Coord A exon
chr9:121112459-121112578
Coord C2 exon
chr9:121113502-121113724
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATATCAAATTGGGCCAATAGCTA
3' ss Score
1.35
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAGAGGTAGAAAGACTGGAAAGAGACCTAGAAAAAAAGATGATAGAAACTGAAGAGCTTAAGAGCAAACAAACAAGGTTCCTTGAGGAAATTAAAAATCAAGATAAATTGAATAAATCATTAAAAGAGGAGGCCATGTTACAGAAACAGAGCTGTGAGGAACTCAAGAGTGACTTAAACACAAAAAATGAATTG
Seq A exon
CTAAAACAGAAGACCATAGAATTAACACGAGCATGTCAGAAGCAATATGAGCTGGAACAGGAATTGGCCTTTTATAAAATTGATGCTAAATTTGAGCCACTAAATTATTATCCATCAGAG
Seq C2 exon
TATGCTGAAATTGATAAAGCCCCAGATGAAAGCCCTTACATTGGCAAATCCAGATACAAGAGAAATATGTTTGCCACAGAGAGTTATATTATTGACAGTGCTCAGGCAGTACAGATCAAGAAGATGGAGCCAGATGAACAACTTAGAAATGATCACATGAACTTGAGAGGCCACACACCACTGGACACGCAACTGGAAGACAAAGAAAAAAAAATAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-'14-22,'14-21,16-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.575
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PD(6.1=15.4)
A:
NO
C2:
PF127952=MscS_porin=PU(14.0=21.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAACAGAGCTGTGAGGA
R:
TTGTCTTCCAGTTGCGTGTCC
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development