MmuEX6100824 @ mm10
Exon Skipping
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35122660-35127530:+
Coord C1 exon
chr2:35122660-35122853
Coord A exon
chr2:35125976-35126095
Coord C2 exon
chr2:35127305-35127530
Length
120 bp
Sequences
Splice sites
3' ss Seq
CGTCTCATATTGGCCAATAGCTA
3' ss Score
3.62
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGGAGATAGAAAGACTGGAAAAAGACCTGGAGAAGAAGACAGTGGAAACAGAAGAGCTTAAGAACAAGCAAACAAAGTTTCTCGAGGAAATAAAGAATCAGGATAAACTAAACAAGTCATTAAAAGAAGAAGCCATGTTACAAAAACAGAGCTGTGAGGAGCTAGAAAGTGACCTCAGCACAAAGAAGGAGTTG
Seq A exon
CTAAAACAGAAAACAGTGGAACTAACACGGGCATGTCAGAAGCAGTATGAGCTGGAGCAGGAACTGGCCTTTTATAAAATTGATGCCAAGTTTGAGCCATTAAATTATTATCCATCAGAG
Seq C2 exon
TATGCTGAAATTGACAAATACCCAGATGAAAGCCCTTACATTGGCAAATCCAGATACAAGAGAAATATGTTTGCCACGGAGACTTACATTGTCAGCGACGCCCAGGCAGTTCAGATCAGGAAGATGGTGCCAGAAGGAGGACAGCTTAGACACGAGCACACACCCCCGAGAGTCCAAGCACCACCTGATCTACAGTTGGAAGATACGGAAAAAAAAATAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-'15-15,'15-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.000 C2=0.505
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PD(6.1=15.4)
A:
NO
C2:
PF131661=AAA_13=PU(38.8=81.6)
Main Skipping Isoform:
ENSMUST00000028237fB968
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAACAGAGCTGTGAGGAGC
R:
ATCAGGTGGTGCTTGGACTCT
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types