HsaEX0014673 @ hg19
Exon Skipping
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123870080-123876002:+
Coord C1 exon
chr9:123870080-123870273
Coord A exon
chr9:123874737-123874856
Coord C2 exon
chr9:123875780-123876002
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATATCAAATTGGGCCAATAGCTA
3' ss Score
1.35
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAGAGGTAGAAAGACTGGAAAGAGACCTAGAAAAAAAGATGATAGAAACTGAAGAGCTTAAGAGCAAACAAACAAGGTTCCTTGAGGAAATTAAAAATCAAGATAAATTGAATAAATCATTAAAAGAGGAGGCCATGTTACAGAAACAGAGCTGTGAGGAACTCAAGAGTGACTTAAACACAAAAAATGAATTG
Seq A exon
CTAAAACAGAAGACCATAGAATTAACACGAGCATGTCAGAAGCAATATGAGCTGGAACAGGAATTGGCCTTTTATAAAATTGATGCTAAATTTGAGCCACTAAATTATTATCCATCAGAG
Seq C2 exon
TATGCTGAAATTGATAAAGCCCCAGATGAAAGCCCTTACATTGGCAAATCCAGATACAAGAGAAATATGTTTGCCACAGAGAGTTATATTATTGACAGTGCTCAGGCAGTACAGATCAAGAAGATGGAGCCAGATGAACAACTTAGAAATGATCACATGAACTTGAGAGGCCACACACCACTGGACACGCAACTGGAAGACAAAGAAAAAAAAATAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_MULTIEX6-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.561
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PD(6.1=15.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAACAGAGCTGTGAGGA
R:
TTGTCTTCCAGTTGCGTGTCC
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)