BtaEX6036316 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112432426-112440457:+
Coord C1 exon
chr8:112432426-112432619
Coord A exon
chr8:112439207-112439326
Coord C2 exon
chr8:112440229-112440457
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTATCAAATTGGGCCAACAGCTA
3' ss Score
3.63
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAGAGGTAGAAAGACTGGAAAGAGACCTGGAGAAGAAGATGATGGAAACTGAAGAGCTTAAAAGCAAACAAGCACAGTTCCTTGAAGAAATTAAAAATCAAGATAAATTGAACAGATCATTAAAAGAGGAGGCTATGCTACAAAAGCAGAGCTGTGAGGAGCTCGAGAGTAACCTTACCACGAAAAATGAACTG
Seq A exon
CTAAGACAGAAGACCATGGAACTAACGCGAGCGTGTCAAAAACAGTATGAACTGGAACAGGAGTTGGCTTTTTATAAAATCGATGCTAAATTTGAGCCACTGAATTATTATCCCTCAGAG
Seq C2 exon
TATGTTGACGTTGATAAAGCCCCAGATGAAAGCCCTTACATTGGCAAGTCCAGATACAAGAGAAATATGTTCGCCACAGAGAGTTACATTGTGGATAATGCCCAGCCAGTTGAGATCAAGAGGATGGAGCCAGAGGAAGGGGAGCAACTTAGAAACGAACGTGTGAGCTTGAAAGCCCATATGCCACTGGACACGGAGCTGGAAGACAAAGAGAGCAAAATAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-'7-13,'7-12,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=0.033 C2=0.567
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PD(6.2=15.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAGGAGCTCGAGAGTA
R:
CTCCGTGTCCAGTGGCATATG
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]