GgaEX0026791 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8349606-8352590:+
Coord C1 exon
chr17:8349606-8349799
Coord A exon
chr17:8351490-8351609
Coord C2 exon
chr17:8352365-8352590
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTACTGATTCATTAGCTA
3' ss Score
2.54
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAGAGATAGAAAAATTAGAAAGAGAGTTAGAGAATGCAATAAAGGAGATGGAGAACCTTAAACTTAACCAGTCTAAAGTGCTTGAGCAACTTCACCATCAAGATGAGGTCAACAAATCATTAAAAGAAAAAACTTTGCAGCAGAAGCAAAGCTGTGAAGATCTACAAAGGGATGTGGATACCAAAAATGAACTG
Seq A exon
CTAAAGCAGAAAACAATGGAGCTGACACGAGCTTGCCAGAAGCAGTATGAGTTGGAGCAGGAACTGGCATTTTATAAGATTGATGCAAAATTTGAGCCATTAAGTTATTTTCCATCAGAG
Seq C2 exon
GATGTTGAGCTTGAAGATGTACCTGGTGAAAGCCCATACATTGGTAAGGCCAGGTACAAAAGAAATATGTTCATAAGAGAAGGCTACATTGCTAGTAAAGCTCAGCAAGTGGAGACTGGAAAAATGCAGCCAGATGAAAATGATTTCTGTAAGAAATCACAGCTGAATCCTCAGTTTCAAACTGTAGATGAGCAATTGGAGAGTAAAGAAAAAAAGATTCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513-'11-13,'11-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=0.025 C2=0.513
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PD(18.8=55.4)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000002299fB6299
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGAGCAACTTCACCATCA
R:
GGCTGCATTTTTCCAGTCTCC
Band lengths:
246-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]