GgaEX0026791 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:9053345-9056204:+
Coord C1 exon
chr17:9053345-9053538
Coord A exon
chr17:9055229-9055348
Coord C2 exon
chr17:9056104-9056204
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTACTGATTCATTAGCTA
3' ss Score
2.54
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAGAGATAGAAAAATTAGAAAGAGAGTTAGAGAATGCAATAAAGGAGATGGAGAACCTTAAACTTAACCAGTCTAAAGTGCTTGAGCAACTTCACCATCAAGATGAGGTCAACAAATCATTAAAAGAAAAAACTTTGCAGCAGAAGCAAAGCTGTGAAGATCTACAAAGGGATGTGGATACCAAAAATGAACTG
Seq A exon
CTAAAGCAGAAAACAATGGAGCTGACACGAGCTTGCCAGAAGCAGTATGAGTTGGAGCAGGAACTGGCATTTTATAAGATTGATGCAAAATTTGAGCCATTAAGTTATTTTCCATCAGAG
Seq C2 exon
GATGTTGAGCTTGAAGATGTACCTGGTGAAAGCCCATACATTGGTAAGGCCAGGTACAAAAGAAATATGTTCATAAGAGAAGGCTACATTGCTAGTAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023483-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATAAAGGAGATGGAGAACCT
R:
AGCAATGTAGCCTTCTCTTATGAACA
Band lengths:
253-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]