RnoINT0038587 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14315112-14318416:+
Coord C1 exon
chr3:14315112-14315305
Coord A exon
chr3:14315306-14318296
Coord C2 exon
chr3:14318297-14318416
Length
2991 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CATCTCACATTGGCCAATAGCTA
3' ss Score
2.52
Exon sequences
Seq C1 exon
AGGAGATAGAAAGGCTGGAAAAAGACCTGGAAAAGAAGACAGTGGAAACAGAAGAGCTTAAGAACAAACAAACAAAGTTTCTTGAGGAAATAAAACATCAGGATAAACTAAACAAGTCATTGAAAGAAGAAGCCATGTTACAAAAACAGAGCTGTGAGGAGCTAGAAAGTGACCTCAACACAAAAAAGGAGCTG
Seq A exon
GTGAGTCTGTTGGGCGTTGGTTTGGCTGTATTCTGTTAGGTTGAGAAATCTCTGCTCTTGCATTTAGAAGCACAGTGTCCTGACTGTAGCATTGGGAAGATGGGGTTGACAGGATCATGGACAAGGGCGTCGTGAGCTGTAGTTGACTGTGATTTGCTGCCCAAAGGATAACATGGGAACAATGGTGCCTGGCACGAGGGACGCATGATGCCAGGCACTGGGAGCAGCTGGTCACACTGCTTAGGACATGTTTCAAATAGCATCACAGATAAGACTGTACATTATCAAAAGTTTAGAGCCTAGCAGAGTTACTCAAAGTTTAAACATAACACACCCTGTGTCATGGGACTTCTTTTCAATAGAAATGGTAGCAGTAATGTGTAAAAGTAAGTGTCAATGCGTGCGCATGTACACACACAGATATATGCAATGCATTTTGATAAATGCCACTGTCCACTTCAGAAAGCTTATTACCAATTTATGCTTTCCACAGCACTGAGTAAAAGGGTCACACTGGGTTTATTATTGTGAACTTACAGGGGAGAAAATGGAATCTTGTTACAGTTTTATTCTTATATTTTTATAATTACTAGAGAAGTGAATGTTATATATGTATTCATTGATCATTTATTTTTCTTTTTTAAATTACCCATTTCATTATTTTTCTCTCTTTTTTGTTATTCCAAATTACTATTCTATATTTAAAAAGAGAATTCTAGGTCTTATTTTGAGAGTTTACATTTTCCTTTGTCTCTTGCAGAAAATCTGATGATAACATCATCTTCAGTGATTTGCAGTTTTATTAAGTGATTGTGCATTAAACTAGGTTTTTTTTTAATAAAAGAAAAGTGTGTGGAATTAAGTCTTTTGAGGGCTATCCTCACCATCAACAAATACTAACCCAACTTGTTCTTTGTCCTTTTTCGGTTTTTCGTTTGCTCATTTGTTTTTTGGGGGTTTTTTGCAAGCTACTTAACTTTTACCTTTCACTGTTCTTGCTTTTTAAATGGAAATGTTTACCTGTCCTGCCACCCTCACGACTGTGAGGACTTGAGGCTCTGAGTGTGAAAATAGCTTTGGGTGAAGCAAGCTAGGAATGCCAGGTGGTGTTTCTGCTCAGTGAAGCCGTGTGTTAGAGGCAGATTGACACCAGTACTGACGACTGCTTCCTTCAGCAGTGGGTCCTCAATAGAGAGACCCAGTGGCATCAGAGCCTAGCTCTCCAGTGCCCTCCAGGTGACATGTCTGTTTGCTTCTTTCTTCTCTTAGCCCACATCTTGGTTTCCTGCAGGTCATTTCCTGCTGAGTCTTTATTCCTCTTTAAGGTAGCTCCTCCAGGACTGCACCGCACACTGTGTTCTGTGGTGTTGCATGAAGCCTGTATTAGTGTGCTCGTTTACACTTTACGTTTTGAAACCGGCTTGCCTCTTTGGGAATGTGTTTGTGTGTGTGTGATGTGTTATAAATGACTTTGTATACGGGACAGTAAGTTTGAATGTGAGAGGAAATTAGTATCATTGTTGCGGTTGTAATATGTTAACTGCAGTCATCTCTTGATTATTCATAGCTGGTGCACAGCTAGCCACAGCCTCGACTGCTGTCTGCTTCGTGTGTGCACTTCCACCAGCAGACATTTGCTGAAGGCTCATCACCACCAAGTCCAGAGCTATGGAGAACACAAACATACTTTGAAAGCAAAGGTTATTGTAGAAAATAGCCCAGGCGTGCTCGCCTTTGTTTAGCCCCATTGTCCTTTTGCTTTGGGGGAAAAACCCTAAACGTAATGATGCATTGATGGGAATTGTCTCTGAGACTCAGGTCCTCTTGAACACTGACTGAACCCGTCAGTGTGTTAAATAGCAAGAGGACATGGATGGCAGTGTGGGACAGCACAGAGTGCTAGCCTTGAACCCAGGTTACTTGAGCTGGTGGGAGAGCGCAGCTCAGTGTTACTCCATTTGATGGATTCTCAGGAGGGGACTGCACGCTAACCTCTGCACGAGTTTGGTTTCCTGGCCTTGTAAAATGTCCCTGTATGCTTGTTTCTTTTCAACTTGCATTTTGATGAAATATTTCTGCATGCTTTTCTGTCTGAAAGGAATCCTCAGATTGTCAAAAAAAAAAAAAAAGAAAGAAAGACAAAAAAGAAAAGGAAAGAAAAGGTAAAAAAGTCACTTAGTGGACCTTTTGGATGAACTCAAAGGATCTGTTTGGTAGTCAGGCCACCTGTGGCAAGGTAGTTCATCAAACTTGAGACTGAAACTTGTGCATTTGCAAATGCAGAAATTAGATTAGATAATTCTTACATTTTCCTCCTAGTGCCAAAATCTCCAAGAGTACCAAAAAGAGGTAATTAAAGTCACTGGAGTGTTAAACGTTACTAATATCACATATTTGCATCTGATTGAGCTCATTTACACTTCTTACTTCTGCTACAAAGAGTACTGCTATTTGGCCCAGCACTGAGGCACATGTCTATACTTCCAGTGCTCAAGAGGCTTAGACGGGAAGATCACATGCTCTGGCTGCTTGGGCTGCATAACAAATTCTGGGCAAACATAGTAAGGTCCCCTGCACCCCTCCCACCCATACCGAACACTCACAGCTCAGATTCATCAGCTAAAGTCAATCTTTCTAGTCCTCAGTAAAACGTCCCTCCATGAACTGAAGCAGAGACTGGGTTTAATACATTTGTGTTAGTGACTAGGATCAGGACACAAAGCACTGCAGGTGGCTGGCATTTGTTTTCATGTTCATGTGAAACAACCTGAATTGTTCTTTATGATTCATTGTGTCCTGAAATGGCACATCAAAGGCCTTTTATGTGACCTCTTCTGAAATGATAATTCTGTGTTTCATTTTCTGCAATATGGGATTGAGATAAGATGCTCTCAGTGTTGTGCTGTTTGCTGTAGTTGTGTGAGAACTGCCCATATCATTGTAGGATTACACTAATGCACTGATGCTTATCCATCTCACATTGGCCAATAG
Seq C2 exon
CTAAAACAGAAAACAGTGGAACTGACGCGGGCATGTCAGAAGCAGTATGAGCTGGAGCAGGAACTGGCCTTTTACAAAATTGATGCCAAGTTTGAGCCACTAAATTATTATCCGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PD(6.2=15.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]