GgaINT1009815 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8349606-8351609:+
Coord C1 exon
chr17:8349606-8349799
Coord A exon
chr17:8349800-8351489
Coord C2 exon
chr17:8351490-8351609
Length
1690 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TTTGCTTACTGATTCATTAGCTA
3' ss Score
2.54
Exon sequences
Seq C1 exon
AAGAGATAGAAAAATTAGAAAGAGAGTTAGAGAATGCAATAAAGGAGATGGAGAACCTTAAACTTAACCAGTCTAAAGTGCTTGAGCAACTTCACCATCAAGATGAGGTCAACAAATCATTAAAAGAAAAAACTTTGCAGCAGAAGCAAAGCTGTGAAGATCTACAAAGGGATGTGGATACCAAAAATGAACTG
Seq A exon
GTAAGATAATCACTTGCAGTATATATCTGAAACAGTTTTGTTGTCAGAAACAGATGCCAATGGGAGAGCTCAAATGGCTGTAGGATTATGCTAAAACTTAAGATAAGTATTTTAGAAGACATAAGGCACTGAAGAGTGTTTTTTCAGTATTCCTTCTGTGAAAAAGTAAGTATACTGAACCAGCAGTCAGTACCAATCTTACAATTTATAGTTTATAAAAACTTTTTGTCTGTAGTAAGTTTTTTTTTTATTTGTTAAAATATTAAGCTGCTCTAAATTATCTGTGTACTGCATCTCCTGCATTGTTCAGAACTTTAAAAGCTGCTGTATCAAGGGGAAAAAAGTTAAGTATTTTTATAGTAACAAGGTATGCATACAACTTGTATGCTAGTAATGCTCCTTGATTATTTTTCCAGGTAAAGTGTATTAGTTTTCTTGTATTTTCTTTACATCATCCTAAAATTTGCATCTAACAGTTGTCTTTCATTGGTAGCTATAAAATACAATATTTGTACAGTGGCCCTGGAAAAAGCCCTGTTGACTGAAGAACGCTCGGTTGTAAATGGCTTGCTGGGATTGTAGTGTTTGGCTTTTAATCTTTCTTGTTAGCCTTGTCCTCTACAGTTTTATCCTTCAGATTCTCTACTGCTAATATATATTTAGCTGTTTCTTCTGTTGAACGTACTCACTAACCAGCGGCCTATTTCTAAAATGCAGTTTTCAGTATAGTTAGATTTGGCAGCAGATATTTTGCAACCTAGCCCACTCTTATCCTCTAGATGACAAACTCTGCTTGCTTCTCTCTCCCTTTAGCTGGTGTATTGGTTTGTCACAGTTCCTTTCCGCAGAGCCTTTATTCCTCACTGAAGGTAGCCCGCTGTGCTCCTGGGTTGCATGCTTATTTTTATTTTTAGGCTTTCTTTGCATGTTTAATAAAGTAGGAATGTTGTATAGAGAGTTCTGGTGAGACTATGTATTCACTGTGTTTTGGGTTTTTTGTTTGTTTGTTTTTTTGCATGGCATGTTTCTTTTTAAGCCTTTTCTCCCTTATTCCAGTCTTACCTATTTCTTTTCCTCCAGTAGTTTTGCTTTCCACTGTCTATTGGAGTATTACTGCATGTTCTCCCTCAGGTATTCAGTACAGCAAGTTGATCTTTAAAAAGGAATCACATGATAGACCTCTTAAAAAATAAATAAAAATCCTAACTAGCATGAGGTTAAGCTAAAATGAAATGCTTAGGCTTTAGGCTTTATGCACGTGACAGTGGAGATAATGCTTTTTTTTTTTTTTTTTTTTTTGCAGCTTAAGACTGTTAAAAATGAGATCTCATTGCTTGTTAATAACAGTAAATATATTCAGTATAGATTTTGCTTAAGAAGTGTACCCAAATTACTTTTTTAAATTAGTGACATTTTCTTTCAAACCTCTCATGCTTGTAAACTTAAGAGACCTTTCATGTGATCATTTGTGTTATACTGTGGAATTCGTCTACGCTTAGGTGTCGTGTTGTATTTTGTAATGAAGTGGCACTTTGTGATACCCTTGACCCAAAATACACCATTTTAATTTTTTTCTAATGTGAACTTTGTTTTGAAGTTAATGTCTTTGCCCTGCTGTTCTGAATTGAATGGTATGTGATAACAATGACAATTCAGTGAATGCGTGTTCCTTTGCTTACTGATTCATTAG
Seq C2 exon
CTAAAGCAGAAAACAATGGAGCTGACACGAGCTTGCCAGAAGCAGTATGAGTTGGAGCAGGAACTGGCATTTTATAAGATTGATGCAAAATTTGAGCCATTAAGTTATTTTCCATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PD(18.8=55.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGTTAGAGAATGCAATAAAGGA
R:
CTCTGATGGAAAATAACTTAATGGCT
Band lengths:
294-1984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]