BtaEX0009468 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112432426-112439326:+
Coord C1 exon
chr8:112432426-112432619
Coord A exon
chr8:112435724-112435780
Coord C2 exon
chr8:112439207-112439326
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTTCCTCCTTTTAGCCC
3' ss Score
10.41
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
AAGAGGTAGAAAGACTGGAAAGAGACCTGGAGAAGAAGATGATGGAAACTGAAGAGCTTAAAAGCAAACAAGCACAGTTCCTTGAAGAAATTAAAAATCAAGATAAATTGAACAGATCATTAAAAGAGGAGGCTATGCTACAAAAGCAGAGCTGTGAGGAGCTCGAGAGTAACCTTACCACGAAAAATGAACTG
Seq A exon
CCCTTGTCTCGGTTTCTTGCAGACCCTTGTCTGCCGATTCTTTATTCTTCCTTAAAG
Seq C2 exon
CTAAGACAGAAGACCATGGAACTAACGCGAGCGTGTCAAAAACAGTATGAACTGGAACAGGAGTTGGCTTTTTATAAAATCGATGCTAAATTTGAGCCACTGAATTATTATCCCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF145801=LRR_9=PD(6.2=15.4)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061592fB1818
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAGGAGCTCGAGAGTA
R:
TCAGTGGCTCAAATTTAGCATCGA
Band lengths:
147-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development